| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2043 |
|---|
| Symbol | |
|---|
| ID | 8132987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 2347751 |
|---|
| End bp | 2348647 |
|---|
| Gene Length | 897 bp |
|---|
| Protein Length | 298 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644865333 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_003017620 |
|---|
| Protein GI | 253688430 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.637177 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATCG AACTACGTCA CCTTCGCTAT TTTATTGCGG TCGCTGAAGA GCTGCATTTT
GGTCGAGCCG CAGAAAGATT ACGCATTTCA CAGCCGCCAC TGAGCCAGCA GATTCAAATT
CTGGAGGAGC AGGTGGGAGC GAAACTGCTG GCGCGCAATA ACCGTAATGT CCAGCTTACC
CCGGCGGGCG AGATGTTCCT GAAAGAAGCC TGGTCGATTA TCAGCCAGGT TGATCAGGCG
GCTGAGCGGG CGTCCCGTAT TCAACGCGGT GAAATTGGGG AATTAACGAT TGGTTTTACC
TCGTCCGCGC CGTTTATCAA AAAGATCTCC AGCAGCCTGC TGCGCTTTCG TCAAACGTAC
CCGGAAGTGC ATATTCAGAT GATGGAGCTC AACACCAAGC AGCAAATTGA ACCGCTGCTG
AACGGTAAGC TCGATATCGG CATTATGCGC AATAACCCGC TGCCGGACGC GCTGGATCAT
CAGTTGTTAT TACGTGAACC GCTGATTGCC GTCGTGCAGG AATCCCATCC CTTAGCTCAG
CAGGCCGCTG GGCGGGCAAT CAATATCACA CAGTTGGCGA ATGAACCGTT CGTTTTCTTC
TCTCGTGCGG TGGGAACCGC ACTGTATGAC GACACGCTGA CGCTGCTGAA ACGCTATGGC
ATCAGCCCCT ACATTACGCA AGAAGTGGGT GAGGCGATGA CTATCGTCGG GCTGGTGTCG
GCGGGGTTAG GCGTATCCAT TTTGCCGGCA TCGTTTTTGC GTATTCGGGT CGATGGCGTG
AAATATTTGC TGCTGGAAGA AGAGGACGCC ACAACGGAAG TCTGGCTGGT TACCGCGCGG
CATCATCCGC AAAGCGCGGC GGCGAAAATG TTAATGTCGC TGATGTTGGG CGGATAA
|
|---|
| Protein sequence | MSIELRHLRY FIAVAEELHF GRAAERLRIS QPPLSQQIQI LEEQVGAKLL ARNNRNVQLT
PAGEMFLKEA WSIISQVDQA AERASRIQRG EIGELTIGFT SSAPFIKKIS SSLLRFRQTY
PEVHIQMMEL NTKQQIEPLL NGKLDIGIMR NNPLPDALDH QLLLREPLIA VVQESHPLAQ
QAAGRAINIT QLANEPFVFF SRAVGTALYD DTLTLLKRYG ISPYITQEVG EAMTIVGLVS
AGLGVSILPA SFLRIRVDGV KYLLLEEEDA TTEVWLVTAR HHPQSAAAKM LMSLMLGG
|
|---|
| |