Gene PC1_2029 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2029 
Symbol 
ID8132973 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp2330820 
End bp2331803 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content53% 
IMG OID644865319 
Productperiplasmic binding protein/LacI transcriptional regulator 
Protein accessionYP_003017606 
Protein GI253688416 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATAAAT TCACTAAGGC GCTGGCAGCA ATCGGGTTGG CTGCGGTTAT GTCACAATCA 
GCTATGGCAG AGAACTTAAA GCTGGGATTT CTGGTTAAAC AACCGGAAGA ACCCTGGTTC 
CAGACCGAAT GGAAATTCGC GGATAAAGCA GGAAAAGATC TCGGTTTTGA CGTGATAAAA 
ATTGCGGTTC CCGATGGGGA AAAGACCCTG AACGCGATTG ACAGCCTGGC GGCCAGTGGA 
GCAAAAGGTT TCGTTATCTG TACGCCCGAT CCGAAATTAG GGCCTGCCAT TATGGCGAAA 
GCGCGCAGCT ACGATCTGAA AGTAATCGCG GTTGACGATC AGTTTGTGAA TGCCAAAGGC 
CAGCCGATGG ATACCGTGCC GCTGGTGATG ATGGCCGCTA CCAAGATCGG TGAGCGTCAG 
GGGCAGGAAC TGTATAAAGA AATGAACAAA CGCGGCTGGA AAGTGGACGA AACGGCCGTG 
ATGGCGATTA CCGCGAACGA GCTGGACACC GCGCGTCGCC GTACCTCGGG TTCTATGGAT 
GCGCTGAAGG CCGCAGGCTT CCCGGAAAAA CAGATCTATC AGGTGCCGAC CAAATCTAAC 
GATATCCCCG GTGCGTTTGA TGCCGCTAAC TCCATGCTGG TGCAGCACCC CGGTGTGAAA 
AACTGGCTGA TTATCGGTAT GAACGACAAT ACCGTGCTGG GCGGCGTGCG TGCGACGGAA 
GGTCAGGGCT TTAAAGCGGA AAACGTGATT GGTATCGGTA TCAACGGCGT GGATGCGGTC 
AGCGAGCTGT CCAAAGGTCA GGCAACAGGC TTCTTTGGTT CACTGCTGCC AAGCCCGGAT 
ATTCACGGTT ACAAGAGTAT CCAGATGCTG AATGACTGGG TCACCAAAGG CGTAGAGCCC 
GAGAAATTTA CCGAAGTGAC CGATGTGGTG CTGATCACTC GTGACAACTT TAAGGTCGAA 
CTGGAGAAAA AAGGCCTGAT GTAA
 
Protein sequence
MHKFTKALAA IGLAAVMSQS AMAENLKLGF LVKQPEEPWF QTEWKFADKA GKDLGFDVIK 
IAVPDGEKTL NAIDSLAASG AKGFVICTPD PKLGPAIMAK ARSYDLKVIA VDDQFVNAKG 
QPMDTVPLVM MAATKIGERQ GQELYKEMNK RGWKVDETAV MAITANELDT ARRRTSGSMD 
ALKAAGFPEK QIYQVPTKSN DIPGAFDAAN SMLVQHPGVK NWLIIGMNDN TVLGGVRATE 
GQGFKAENVI GIGINGVDAV SELSKGQATG FFGSLLPSPD IHGYKSIQML NDWVTKGVEP 
EKFTEVTDVV LITRDNFKVE LEKKGLM