Gene PC1_2025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2025 
Symbol 
ID8132969 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp2325929 
End bp2326510 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content52% 
IMG OID644865315 
ProductNa(+)-translocating NADH-quinone reductase subunit E 
Protein accessionYP_003017602 
Protein GI253688412 
COG category[C] Energy production and conversion 
COG ID[COG4657] Predicted NADH:ubiquinone oxidoreductase, subunit RnfA 
TIGRFAM ID[TIGR01943] electron transport complex, RnfABCDGE type, A subunit 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGAAT ACGCATTGCT CTTTGTTAGC ATCCTTCTGG TAAATAATTT CGTCTTAGTG 
AAGTTTCTTG GGCTGTGCCC CTTTATGGGC GTGTCCAAAA AGCTGGAGAC GGCGATTGGC
ATGGGAATGG CGACCACGTT CGTCATGACC GTCGGCTCCA TGTTTTCCTG GCTGGTTAAC
GAGTTTATTC TTGTTCCGCT CGATATTCTC TATCTACGCA CCATGGCGTT TATTCTGGTG
CTCGCCGTTG TGGTGCAATT TTCCGAGATG TTCGTACGCA AAGTCAGCCC GGAGTTGTAT
CGTCTGCTGG GGATTTTCCT GCCGCTGATT ACCACCAACT GTGCGGTGCT TGGTGTCGTC
CTGCTTAACA TCAATCTATC GCACGGTTTC CTGAAATCGA CGATTTATGG CTTCGGCGGT
GCTGCGGGCT TCTCGCTGGT CATGGTGCTT TTTGCCGCCA TTCGCGAACG CCTCGCCGTG
TCGGATATTC CCGCGCCGTT CAGGGGTTCT TCTATCGCGC TGATCACCGC AGGCCTCATG
TCATTGGCGT TTATGGGCTT TACCGGACTG GTGAAATTCT GA
 
Protein sequence
MTEYALLFVS ILLVNNFVLV KFLGLCPFMG VSKKLETAIG MGMATTFVMT VGSMFSWLVN 
EFILVPLDIL YLRTMAFILV LAVVVQFSEM FVRKVSPELY RLLGIFLPLI TTNCAVLGVV
LLNINLSHGF LKSTIYGFGG AAGFSLVMVL FAAIRERLAV SDIPAPFRGS SIALITAGLM
SLAFMGFTGL VKF