Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2010 |
Symbol | |
ID | 8132954 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2306577 |
End bp | 2307461 |
Gene Length | 885 bp |
Protein Length | 294 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644865300 |
Product | 23S rRNA pseudouridylate synthase B |
Protein accession | YP_003017587 |
Protein GI | 253688397 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.606088 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCGAAA AGTTACAAAA AGTTCTGGCG CGCGCCGGAC ATGGCTCACG CCGCGAAATT GAAGGTATCA TTCAGGCTGG ACGCGTCAGC GTTGACGGTA AAGTTGCCAC ACTGGGCGAC CGCGTTGAAG TGACGAAAGC CACCAAAATC CGTATTGATG GTCATGTGGT TACCGTTAAG GAAACCGAAG AAACCGTGTG TCGCGTACTG GTGTATTACA AACCAGAAGG CGAGCTGTGT ACCCGCAACG ATCCTGATGG CCGCCCGACG GTGTTTGACC GTCTGCCGAA AATTCAGGGC TCTCGCTGGG TGGCGGTAGG GCGTCTCGAC GTGAACACGT CCGGTCTGCT GCTGTTCACG ACCGACGGTG AGTTAGCCAA TCGCCTGATG CATCCTAGCC GTGAGGTTGA GCGTGAATAC GCCGTGCGGG TCTTCGGTGA AGTGGACGAC GAAAAGATCA AACAACTGAG CAAAGGCGTC CAGTTGGAAG ACGGCCCGGC GTCGTTCCGT ACGATCCGCT ATCAGGGCGG TGAAGGTCTG AACCAGTGGT ATAACGTGAC GCTGACAGAA GGGCGTAACC GTGAAGTTCG CCGACTGTGG GAAGCGGTTG GCGTGCAGGT GAGCCGCCTG ATTCGCGTAC GCTACGGCGA TATTACGCTG CCGAAAGGTC TGCCGCGCGG TGGCTGGGCA GAAATGCCGC TGGAACAGCT GAATTATCTG CGTGAGCTGG TGCAGCTTCC GGCAGAAACG GTATCGAAAC TGCCAGTTGA GCGCGAACGT CGTCGGGTGA AAGCGAATCA AATCCGTCGT GCGGTAAAAC GCCATAGCCA GATTAGTACC GCTCCGGCCC GTCGTACGTC TCCGAAACCG AAGCGCAACG GCTAA
|
Protein sequence | MSEKLQKVLA RAGHGSRREI EGIIQAGRVS VDGKVATLGD RVEVTKATKI RIDGHVVTVK ETEETVCRVL VYYKPEGELC TRNDPDGRPT VFDRLPKIQG SRWVAVGRLD VNTSGLLLFT TDGELANRLM HPSREVEREY AVRVFGEVDD EKIKQLSKGV QLEDGPASFR TIRYQGGEGL NQWYNVTLTE GRNREVRRLW EAVGVQVSRL IRVRYGDITL PKGLPRGGWA EMPLEQLNYL RELVQLPAET VSKLPVERER RRVKANQIRR AVKRHSQIST APARRTSPKP KRNG
|
| |