| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2001 |
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| Symbol | |
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| ID | 8132945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2296703 |
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| End bp | 2297431 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644865291 |
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| Product | Oligogalacturonate-specific porin |
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| Protein accession | YP_003017578 |
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| Protein GI | 253688388 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAGCTA AAATATTGAC GATGATGGTA ACTTCTTTAA TCAGCTTAAG CTCCATGGCT
GTTACGATTG ACTATCGTCA TGAAATGAAA GACACGGCAA AGAACGATCA TAAAGATCGC
CTGCTGATGT CCCACCGTTT TGACAACGGC TTTGGTCTGT CCATGGAAGC CAAGTGGGGA
CAATCTGACA GCGATAAGAC GCCAAATAAA CCGTTTAACG AGACGGTCAG CAACGGCACC
GAAGTGACTG CCAGCTACCT GTACAAATTC GATAAAACCT TTGGTTTGGA AGCTGGTTTA
AACATGGTTT CCAATTCTAG TAGCAACAAC TATCGTCCTT ATATTAAAGG CACGGCCAAT
ATTACCGATT CACTGTATTA TGGCCTGCGC TATCGTGCAT CTTACCTCCG CGTGAGTGGT
GATATTGGTA AGTCAAGTGT GACAAACCCT ACCGATATCA CTGGTTATAC TATTACCAGT
ACGCTGGGTT ATAAACTGCC GGCCAACTTT GTGGTTGAAT ACGAATTCGA ATACAACAAA
AACAACAAAG CAGGCGCTCC TTGGTATTTA GCGGATAGTG AAAATTATGA AATGAGCCAC
GATATTAAAC TGGCTTACAA AGTCGACAAA AATTGGACAC CTTACGCTCA GATCGGGAAC
GTAAAAGGCA GTACAGTCAC TGACGAGCGC CAAACTCGCT ACCGTGTTGG TGTACAATAC
AGTTTCTAA
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| Protein sequence | MKAKILTMMV TSLISLSSMA VTIDYRHEMK DTAKNDHKDR LLMSHRFDNG FGLSMEAKWG
QSDSDKTPNK PFNETVSNGT EVTASYLYKF DKTFGLEAGL NMVSNSSSNN YRPYIKGTAN
ITDSLYYGLR YRASYLRVSG DIGKSSVTNP TDITGYTITS TLGYKLPANF VVEYEFEYNK
NNKAGAPWYL ADSENYEMSH DIKLAYKVDK NWTPYAQIGN VKGSTVTDER QTRYRVGVQY
SF
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