Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1988 |
Symbol | oppD |
ID | 8132932 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2285516 |
End bp | 2286511 |
Gene Length | 996 bp |
Protein Length | 331 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644865278 |
Product | oligopeptide transporter ATP-binding component |
Protein accession | YP_003017565 |
Protein GI | 253688375 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGCAAGA TTGAGTTAAC TGGCGCGCAC GACGCGCTGC TACATGTTCA GGATCTCCGG GTAACGTTCA AAACGCAGGA TGGCGATGTA ACGGCGGTTA ACGACCTGAA TTTCACGCTC AACGCCGGTG AGACGCTGGG AATTGTCGGA GAATCGGGTT CCGGTAAATC ACAAACCGCG TTTGCGCTGA TGGGGTTGTT GGCACGCAAT GGTCGCATTG GCGGCTCCGC CCGTTTTCGT GGTAAAGAAA TTCTCAACCT GCCTGAAAGC CAACTGAATA AGCTACGTGC TGAAGAAATC AGTATGATTT TCCAGGATCC GATGACCTCG CTGAACCCTT ACATGCGCGT CGGTGAACAG CTGATGGAAG TGCTGATGCT GCACAAGCAT CTGAGCAAAA GCGAAGCGTT TGAAGAGTCG GTCAAAATGC TGGATGCGGT CAAAATGCCG GAAGCGCGTA AGCGTATGAA GATGTATCCG CATGAATTTT CCGGTGGGAT GCGTCAGCGC GTGATGATCG CGATGGCGCT GCTGTGTCGT CCAAAGTTAC TGATTGCCGA TGAACCGACA ACGGCACTGG ATGTGACGGT TCAGGCGCAG ATTATGACGC TGTTGAACGA GCTGAAGCGC GAGTTTAATA CCGCCATTAT CATGATCACC CATGACCTGG GCGTCGTTGC TGGTATTTGT GACAAAGTAC TGGTGATGTA CGCGGGACGT ACCATGGAAT ACGGCGCTGC CCGCGATGTC TTTTATCATC CGAGTCATCC ATATTCTGTC GGCCTGCTTA ATGCCGTGCC GCGTCTGGAT GCAGAGGATG AAGTATTAGC GACCATTCCG GGTAATCCAC CGAACTTATT ACGTCTGCCG AAAGGGTGCC CATTCCAACC GCGCTGCCCG TATTCAATGG ATGTCTGCCA TAGCGCACCT GCGCTGGAAT CTTTTGGTGA TGGCCGCTTG CGCGCCTGCT TTAGAGCGAT TGAGGAGGTG GTATGA
|
Protein sequence | MSKIELTGAH DALLHVQDLR VTFKTQDGDV TAVNDLNFTL NAGETLGIVG ESGSGKSQTA FALMGLLARN GRIGGSARFR GKEILNLPES QLNKLRAEEI SMIFQDPMTS LNPYMRVGEQ LMEVLMLHKH LSKSEAFEES VKMLDAVKMP EARKRMKMYP HEFSGGMRQR VMIAMALLCR PKLLIADEPT TALDVTVQAQ IMTLLNELKR EFNTAIIMIT HDLGVVAGIC DKVLVMYAGR TMEYGAARDV FYHPSHPYSV GLLNAVPRLD AEDEVLATIP GNPPNLLRLP KGCPFQPRCP YSMDVCHSAP ALESFGDGRL RACFRAIEEV V
|
| |