Gene PC1_1972 details

Gene Information

• Locus tag: PC1_1972
• ID: 8132915
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 2265014
• End bp: 2266939
• Gene Length: 1926 bp
• Protein Length: 641 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 644865261
• Product: DNA topoisomerase III
• Protein accession: YP_003017549
• Protein GI: 253688359
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0550] Topoisomerase IA
• TIGRFAM ID: [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.850932
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGACTTT TTATTGCCGA AAAGCCCAGC CTCGCGCGGG CGATTGCAGA CGTGTTACCC 
AAACCGCATC GACGTGGCGA TGGCTTTATT GCCTGCGGCC AGAATGATGT CGTGACGTGG 
TGCGTAGGAC ACCTGCTGGA GCAGGCGCAG CCGGATGTTT ATGATGCGCG CTACGCCCGG 
TGGTCTCTTG CCGATTTACC TATCATTCCT CAGAAATGGT TGCTGCAACC GCGTCCCTCG 
GTCAGTAAGC AGTTGAACAC CATTAAAAAG CTCCTGAATG ATGCCAACGA AGTGATCCAC 
GCGGGAGACC CCGATCGTGA AGGGCAACTG CTGGTGGATG AAGTGTTGGA ATATCTGGCT 
TTGCCGGAAG AGAAACGCCA GCAGGTGCGT CGTTGCCTGA TCAATGATCT CAACCCACAG 
GCGGTAGAGC GCGCGGTTTC TCGTTTGCGT GAGAACCGAG AGTTCATTCC TTTGTGCGTG 
TCGGCACTGG CGCGTTCCCG TGCAGATTGG CTCTACGGCA TTAACATGAC CCGTGCCTAT 
ACGCTATTAG GACGCAATGC CGGCTATGAT GGCGTGTTGT CGGTTGGCCG CGTGCAAACG 
CCGGTGCTGG GGCTGGTGGT GCGGCGGGAT GAAGAAATCG AAAACTTCGT TGCCAAAGAT 
TACTTTGAAG TGAAAGCCCA TATCGTGACG CCTGCCGATG AGCGCTTTGT CGCACTCTGG 
CAGCCCAGCG AATCCTGTGA ACCTTATCAG GATGAAGAAG GGCGGTTATT GCATCGTTCT 
CTGGCAGAAC ATGTCGTCAA ACGTATTGAA GGCCAGCCCG CGTTTGTCAC CAGCTATAAT 
GATAAACGGG AATCGGAAAC CGCGCCGCTC CCTTATTCGC TGTCGACACT ACAGATCGAA 
GCGGCGAAGC GTTTCGGGCT GAGTGCTCAA CAAGTGCTGG ATGTGTGCCA GAAACTCTAT 
GAAACCCATA AGCTGATCAC CTATCCGCGT TCTGATTGCC GCTATCTGCC CGAGGAACAT 
TTTGCCGGGC GTCACGCCGT CTTAAACGCG ATATCCGTGC ACCAGCCGGA TCTACTGCCA 
CAGCCGGTTA TGGATGTGGA TCGACGCAAC CGTTGCTGGG ACGATGGTAA GGTCGATGCT 
CACCACGCAA TTATTCCTAC CGCTCGTAGC GCAAGCGCCT CGCTGACGGA AAATGAGCGT 
AAAGTGTATG GTTTAGTTGC ACGGCAATAC ATCATGCAAT TTTGCCCAGA CGCCGTGTTC 
CGCAAGTGTG TCATTGAACT GGATATTGCA GGGGGTAAAT TTATTACCAA AGCACGGTTC 
CTGGCCGAAG CCGGGTGGCG CACGCTGCTG GGCGGTAAAG AACGCGACGA AGAAAACGAA 
GGCATGCCGT TGCCCGTGGT GGCAAAAGGT GATGAGCTAC TGTGTGAACG CGGTGAAGTG 
GTTGAGCGCC AAACGCAGCC GCCGCGACCG TTTACCGATG CGACGTTGCT GTCGGCGATG 
ACGGGTATCG CGCGTTTTGT GCAGGATAAA GAACTGAAGA AAATCCTACG GGCGACCGAT 
GGATTAGGCA CAGAGGCGAC GCGAGCAGGT ATCATCGAAT TATTATTTAA ACGGACGTTT 
CTATTTAAGA AAGCGCGCTA TATTCACGCG AGTGAAGCGG GACGGGCGTT GATTCACTCA 
CTGCCTGCCA GTGCAGCACA CCCAGACATG ACGGCGCATT GGGAAGCCAC GTTGACACAA 
ATCAGCGAGA AGAAATGCCG CTATCAGGAT TTTATGCAGC CGCTGACTCA TTCCCTGCAG 
GAGCTGATTC AGCAGGCCAA ACAAAACGGT GCGGTGAGAG CGTTTAAAGG GCTTTCCGCG 
CCGCAGTCGG GTGCCGCAAA ACGGCGCAAG CCTCAGACTA AAAAAGCGAA GGAGCAGGAG 
CAATGA 

 

Protein sequence

MRLFIAEKPS LARAIADVLP KPHRRGDGFI ACGQNDVVTW CVGHLLEQAQ PDVYDARYAR 
WSLADLPIIP QKWLLQPRPS VSKQLNTIKK LLNDANEVIH AGDPDREGQL LVDEVLEYLA 
LPEEKRQQVR RCLINDLNPQ AVERAVSRLR ENREFIPLCV SALARSRADW LYGINMTRAY 
TLLGRNAGYD GVLSVGRVQT PVLGLVVRRD EEIENFVAKD YFEVKAHIVT PADERFVALW 
QPSESCEPYQ DEEGRLLHRS LAEHVVKRIE GQPAFVTSYN DKRESETAPL PYSLSTLQIE 
AAKRFGLSAQ QVLDVCQKLY ETHKLITYPR SDCRYLPEEH FAGRHAVLNA ISVHQPDLLP 
QPVMDVDRRN RCWDDGKVDA HHAIIPTARS ASASLTENER KVYGLVARQY IMQFCPDAVF 
RKCVIELDIA GGKFITKARF LAEAGWRTLL GGKERDEENE GMPLPVVAKG DELLCERGEV 
VERQTQPPRP FTDATLLSAM TGIARFVQDK ELKKILRATD GLGTEATRAG IIELLFKRTF 
LFKKARYIHA SEAGRALIHS LPASAAHPDM TAHWEATLTQ ISEKKCRYQD FMQPLTHSLQ 
ELIQQAKQNG AVRAFKGLSA PQSGAAKRRK PQTKKAKEQE Q