Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1970 |
Symbol | |
ID | 8132913 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 2262208 |
End bp | 2264058 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644865259 |
Product | protease 4 |
Protein accession | YP_003017547 |
Protein GI | 253688357 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00705] signal peptide peptidase SppA, 67K type [TIGR00706] signal peptide peptidase SppA, 36K type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.281538 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGCACAT TGTGGCGAAT TTTTAGTGGA TTTTTTAAGT GGACATGGCG TCTGCTTAAT TTTATCAGAG AATTTATTCT CAATATTTTC CTTATCGCCC TGATTCTGGT TGGCGTTGGG ATCTACTCAC AGGTAAAAAC AACGCCGGAA GCAGCCACGA AGGGTGCGCT GCTGGTCGAT CTGACGGGTG TGGTCGTTGA TCAACCCACC GTCAATAACA AACTACGCCA ATTAGGGCGC GAATTCTTCG GCGCATCGAA CAACCGTCGT CAGGAAAATT CACTGTTTGA TATCGTCGAC AGTATTCGTC AGGCAAAAAG CGACGACAAC ATCACAGGAA TGGTGCTGGA TCTCAGCGAC TTCACTGGTG CCGATCAACC GTCCTTACAA TATATTGGTA AGGCGCTGCG CGAATTCCGT GATAGCGGTA AACCCATTTA TGCAGTCGGC GACAGCTACA ACCAGTCTCA ATATTATTTG GCCAGTTTTG CCAATACGGT GTCATTGACG CCACAAGGTA GCGTCGATCT GCACGGTTTT GCGACCAATA ATCTCTACTT CAAATCCATG CTCGACAAAC TGAAAGTGAC CACCAATATC TTCCGTGTGG GCACCTATAA GTCAGCCGTT GAACCGTATC TGCGTGACGA TATGTCCCCT GCGGCGCGCG ATGCCGATGG CCGTTGGATC AACGCGCTGT GGCAACAGTA TTTAAATACG GTTTCCGCTA ACCGCCAGAT TACGCCTCAG CAGCTTTTCC CTGGTGCGGC GGGTATCATT GCAGGCTTAC AGTCCGTTCA GGGCGATACC GCACGCTATG CGCTGGACAA CAAACTGGTT GATGAAGTGG CATCACGTTC CATGACCGAG CAGTCGCTGG TTAAAGCGTT CGGTTGGAAT AGTCAGAAAA ACAATTTTAA CTTCGTCAGC ATCTACGATT ACGTCGTCAA ACCGCCAGTG CAAAACAATA ATCAGATCGC GGTTGTGTTT GCTAATGGTG CAATCATTGA CGGGCCGGAA ACACCGGGAA TGGTCGGTGG CGATACCACC GCAGCGCAAA TTCGTGCCGC ACGCCTCGAT CCTAAAGTCA AAGCACTGGT ACTGCGCGTC AATAGCCCCG GTGGTAGTGT CACAGCGTCG GAGCTGATTC GCTCGGAACT GATGGCGCTC CGTCTGGCGG GCAAACCGAT CGTGGTATCT ATGGGCGGTA TGGCAGCATC GGGTGGCTAC TGGATCTCAA CGCCAGCAAA CGCGATCATC TCCAGCGCCA GTACGCTGAC AGGCTCTATC GGCATTTTTG GCGTGATTAC CACGTTCGAA AACTCGCTGG AAAGCCTTGG CGTCCATACG GATGGCGTTG CCACCTCCCC ACTGGCCGAT CTGTCGATTA CCAAATCCCT GCCGCCTGAA TTCTCGCAGA TGATGCAGTT GAGTATTGAA CGCGGCTATA AGAACTTTAT CGATATCGTG GCACAGGCAC GTAAGAAAAC GCCGGAGCAA ATCGATCAGA TCGCGCAAGG TCACGTTTGG GTCGGTAGCG ATGCGAAAGA AAATGGCCTG GTCGATCAGA TCGGTGATTT TGATGACGCC GTGAAGAAAG CCGCTGAGTT GGCTAAACTA GGACAATATC AATTGAACTG GTATGCCGAA CAGCCGGGCC TGCTCGACAC CATGCTGAAT CAGGTGAACG CTTCCGTTTA CGCCCTACTG CCCGTTGCCG TTCAGTCTAT GTTGCCGGCA CCGGTCGCAC AGCTGGCGGA GGCCGTGCGG GCACAGCCGT CTATCATGAA TAACCTGAAC GACCCGCAGA ACCGGTACGC ATTTTGCCTT AACTGCGGAG AAGTCCGGTA G
|
Protein sequence | MRTLWRIFSG FFKWTWRLLN FIREFILNIF LIALILVGVG IYSQVKTTPE AATKGALLVD LTGVVVDQPT VNNKLRQLGR EFFGASNNRR QENSLFDIVD SIRQAKSDDN ITGMVLDLSD FTGADQPSLQ YIGKALREFR DSGKPIYAVG DSYNQSQYYL ASFANTVSLT PQGSVDLHGF ATNNLYFKSM LDKLKVTTNI FRVGTYKSAV EPYLRDDMSP AARDADGRWI NALWQQYLNT VSANRQITPQ QLFPGAAGII AGLQSVQGDT ARYALDNKLV DEVASRSMTE QSLVKAFGWN SQKNNFNFVS IYDYVVKPPV QNNNQIAVVF ANGAIIDGPE TPGMVGGDTT AAQIRAARLD PKVKALVLRV NSPGGSVTAS ELIRSELMAL RLAGKPIVVS MGGMAASGGY WISTPANAII SSASTLTGSI GIFGVITTFE NSLESLGVHT DGVATSPLAD LSITKSLPPE FSQMMQLSIE RGYKNFIDIV AQARKKTPEQ IDQIAQGHVW VGSDAKENGL VDQIGDFDDA VKKAAELAKL GQYQLNWYAE QPGLLDTMLN QVNASVYALL PVAVQSMLPA PVAQLAEAVR AQPSIMNNLN DPQNRYAFCL NCGEVR
|
| |