| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1947 |
|---|
| Symbol | nhaB |
|---|
| ID | 8132890 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 2238634 |
|---|
| End bp | 2240214 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644865236 |
|---|
| Product | sodium/proton antiporter |
|---|
| Protein accession | YP_003017524 |
|---|
| Protein GI | 253688334 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3067] Na+/H+ antiporter |
|---|
| TIGRFAM ID | [TIGR00774] Na+/H+ antiporter NhaB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00267858 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGGCA TGCCCCTCCA CCGCGCGCTG TTAAAAAATT TCCTGGGATA CGCGCCAGAC
TGGTACAAAC TGACTATTTT TTGCTTCTTG CTGGTTAATC CGCTGCTGTT CTATTTTGTC
AGCCCATTTT GGGCCGGCTG GTTATTAGTT GTGGAGTTTA TTTTTACGTT AGGCATGGCG
CTGAAATGTT ACCCGCTACA ACCCGGTGGC CTGCTGGCGC TACAAGCCAT GCTCATCGGT
ATGACCAGTC CGCAGCAGGT GTGGCATGAA GTCACGGGGA ATATTGAAGT CCTCATGCTG
CTGGTGTTTA TGGTGGCAGG CATCTATTTC ATGAAGCAAC TGCTGCTTTT TGTCTTTACT
AAACTGCTGC TGCGCATTCA TTCCAAAGCA CTGTTATCTC TCGCCTTCTG CGGTGCCGCC
GCCTTCCTTT CCGCATTCCT TGATGCTCTG ACCGTGATTG CCGTTGTTAT CAGCGTCGCT
ATCGGATTTT ATGGTATTTA CCACCGTTTC GCGTCCCAAC AGGGTGGGAA CGAAGCGGAT
ATCAGCGATG ATAGCGCGCT AAGCAGCGAG GAGCATCGTC ATACGCTGGA ACAGTTCCGG
GCATTCCTGC GCAGCCTGCT CATGCATGCT GGCGTAGGTA CTGCACTGGG CGGCGTGATG
ACAATGGTTG GCGAACCTCA GAATTTGATC ATCGCGAAAA GCGCTGGCTG GGATTTCGTC
AGCTTCTTCC TGCATATGTC ACCCGTGACC GTTCCCGTCT TTATTTGCGG GATTCTAACC
TGCGTGCTGG TTGAGCGTTT TAAACTCTTC GGCTATGGCG TAAATCTGCC GGACAACGTG
CGCCGCGTGC TTGAGGATTA CGATCGGGAC ATGACAGAAA AGCGCACGCC ACAGGATAAA
GTACGTTTAC TCGTACAGGC CGTGATTGGC GTTTGGCTTA TTGTCGCGCT GGCGTTTCAT
CTGGCTGAGG TCGGATTGAT TGGCCTTTCC GTGATTATTA TGGCCACGGC ATTCTGCGGC
GTGACCGAAG AACATGCCAT CGGTAAAGCG TTTCAGGATG CCATGCCGTT TACCGCGCTG
CTGACGGTTT TCTTTGCCAT CGTTGCCGTC ATTATCGATC AGCAGCTGTT TTCTCCGATT
ATCCGTTACG TCCTGCAATC TTCTGAGAGT TCGCAACTGA CGCAATTTTA TCTGTTCAAT
GGCCTGCTCT CATCGATATC GGATAACGTC TTTGTTGGTT CGGTTTATAT CAACGAAGCG
CGCAGCGCCT TTGAGAACGG TCACATCTCG CTCTCTCAGT TCGAGTTGCT CGCCGTGGCG
ATCAATACCG GCACCAACCT GCCTTCTGTC GCCACGCCGA ATGGGCAAGC GGCGTTTCTG
TTTCTGCTGA CATCTTCGCT GGCTCCGCTT ATCCGCCTGT CTTACGGACG TATGGTGATT
ATGGCGCTGC CTTACACGAT TGTGATGACG CTGGTCGGGT TGCTTTGCGT TGAGTTCACG
CTAGTGCCGT TTACTGACTT TTTGATGAAT AATCACTGGA TTTCTTTGCC AAATTTGACC
CTATCGGGCA GTCACTCATA A
|
|---|
| Protein sequence | MTGMPLHRAL LKNFLGYAPD WYKLTIFCFL LVNPLLFYFV SPFWAGWLLV VEFIFTLGMA
LKCYPLQPGG LLALQAMLIG MTSPQQVWHE VTGNIEVLML LVFMVAGIYF MKQLLLFVFT
KLLLRIHSKA LLSLAFCGAA AFLSAFLDAL TVIAVVISVA IGFYGIYHRF ASQQGGNEAD
ISDDSALSSE EHRHTLEQFR AFLRSLLMHA GVGTALGGVM TMVGEPQNLI IAKSAGWDFV
SFFLHMSPVT VPVFICGILT CVLVERFKLF GYGVNLPDNV RRVLEDYDRD MTEKRTPQDK
VRLLVQAVIG VWLIVALAFH LAEVGLIGLS VIIMATAFCG VTEEHAIGKA FQDAMPFTAL
LTVFFAIVAV IIDQQLFSPI IRYVLQSSES SQLTQFYLFN GLLSSISDNV FVGSVYINEA
RSAFENGHIS LSQFELLAVA INTGTNLPSV ATPNGQAAFL FLLTSSLAPL IRLSYGRMVI
MALPYTIVMT LVGLLCVEFT LVPFTDFLMN NHWISLPNLT LSGSHS
|
|---|
| |