| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1919 |
|---|
| Symbol | |
|---|
| ID | 8132862 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 2211328 |
|---|
| End bp | 2212242 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644865208 |
|---|
| Product | periplasmic solute binding protein |
|---|
| Protein accession | YP_003017496 |
|---|
| Protein GI | 253688306 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0803] ABC-type metal ion transport system, periplasmic component/surface adhesin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00461225 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGGTT TTCACGCCCG TTTCCCCGCC CTGTTTCGTC ACATCGCACT GCCGTGCGTG
TTACTGCTTT TAGCCGGTAC CTCCGCTCAA GCGGCTGAAA AGCTTAAAGT CATCACCACC
TTTACCATCA TTCAGGATAT CGCACAGAAT ATTGCAGGCG ATGCCGCGAC CGTCGAATCC
ATCACCAAAC CCGGTGCCGA GATTCATGAT TATCAACCGA CACCGCGCGA TATTGTGAAA
ACACAGTCTG CGCAGTTGGT ACTGTGGAAC GGAATGAATC TTGAGCGCTG GTTTACGCGC
TTTTTTGAAA ACGTGAAAAA TGTGCCCGCC GTTGTAGTAA CGGAAGGCAT CACGCCGCTT
CCGATTCGTG AAGGCGCTTA TAATGGCAAC CCAAACCCGC ATGCCTGGAT GTCTCCCTCC
AATGCATTAA TCTATATTGA AAATATCCGC AAAGGCCTGG TGCAAGCCGA TCCTGCTAAT
GCAGAGACAT ATAATCGTAA TGCCAAAGCC TATGCAGAAA AAATTAAGGC TCTCGACGCA
CCTCTGCGTG AGCGTCTTTC CCGCATTCCA GAACAACAAC GTTGGTTAGT CACCAGTGAA
GGCGCCTTCA GCTATCTGAC GAAGGATTAT CAGTTCAATG AGGTCTACCT CTGGCCAATC
AATGCCGACG AGCAAGGCTC TCCGCAGCAA GTGCGTCGGG TTATCGATAC CGTGCGCGAA
AAATCTATTC CTGTGGTATT CAGCGAAAGT ACCGTTTCCG ATAAACCAGC CAAACAGGTC
AGCAAGGAAA CGGGGGCTAA ATATGGCGGC GTACTATATG TTGATTCGTT GTCTACAGAA
AAAGGCCCTG TGCCAACCTA TATCGACCTG TTACAAGTGA CGGTGGAAAC CATCGCGAAA
GGATTTAATC AATGA
|
|---|
| Protein sequence | MIGFHARFPA LFRHIALPCV LLLLAGTSAQ AAEKLKVITT FTIIQDIAQN IAGDAATVES
ITKPGAEIHD YQPTPRDIVK TQSAQLVLWN GMNLERWFTR FFENVKNVPA VVVTEGITPL
PIREGAYNGN PNPHAWMSPS NALIYIENIR KGLVQADPAN AETYNRNAKA YAEKIKALDA
PLRERLSRIP EQQRWLVTSE GAFSYLTKDY QFNEVYLWPI NADEQGSPQQ VRRVIDTVRE
KSIPVVFSES TVSDKPAKQV SKETGAKYGG VLYVDSLSTE KGPVPTYIDL LQVTVETIAK
GFNQ
|
|---|
| |