| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1918 |
|---|
| Symbol | |
|---|
| ID | 8132861 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 2210441 |
|---|
| End bp | 2211331 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644865207 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003017495 |
|---|
| Protein GI | 253688305 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1121] ABC-type Mn/Zn transport systems, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0148813 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAGCG ATCGAGCAGT ACAGTCATTA GAAGTCAATG ATGTTTCGGT TACTTACAGC
AACGGGCATC AAGCTATTCG CCACGCCTCA TTTTCCCTGA CCGGCGGTAC GATTTGCGCC
TTGGTTGGCG TAAACGGCAG TGGAAAATCG ACGCTGTTCA AAAGCATCAT GGGGTTAGTC
AAGCCTACCT CTGGGCAGGT ACTGCTCAAC CAGCAGCCGA TCTATCAGGC GCTAAAACAG
AATCTGGTTG CCTATGTTCC ACAAACAGAG GATGTAGACT GGAATTTTCC CGTTCTGGTG
TCCGATGTCG TCATGATGGG ACGCTACGGA CGGATGAATT TCCTGCGCAT CCCAAGTAAA
CAGGATCGCA CCATTGTCGC GGAATCACTG GAACGCGTTG GGTTATCGAC GCTGCAACAT
CGCCAGATCG GTGAACTCTC CGGCGGTCAA AAAAAACGGG TATTTCTGGC GCGGGCACTG
GCTCAACAAG GCAGCGTGTT ACTGCTGGAT GAACCTTTCA CCGGCGTAGA CGTTAAAACA
GAGAACGCTA TTATCGATCT GCTGCGCACG TTGCGCGATG AAGGCCATTT GATTCTGGTG
GCAACCCATA ACCTTGGCAG CGTTCCCGAG TTTTGCGACA ACGTTATTTT GGTCAATCGT
ACCGTTTTAG CCGCCGGGCC GACGCACAAT ACCTTCACAC AAAGCAATTT GGAGAAAACG
TTCGGTGGCG TTCTGCGACA CATCAACCTT GGAGGATCTC ATCTTCACGA TGATGACGAT
GTCCGCTCGG TGACAGTGCT GACAGACGAT GAACGTCCGG CTGTGTTCTA CGGTTCGACC
AAAAGCGATC CTCCTGCGTC ACGTACAATA CCGGAGGAGA AGCAGCCCTG A
|
|---|
| Protein sequence | MSSDRAVQSL EVNDVSVTYS NGHQAIRHAS FSLTGGTICA LVGVNGSGKS TLFKSIMGLV
KPTSGQVLLN QQPIYQALKQ NLVAYVPQTE DVDWNFPVLV SDVVMMGRYG RMNFLRIPSK
QDRTIVAESL ERVGLSTLQH RQIGELSGGQ KKRVFLARAL AQQGSVLLLD EPFTGVDVKT
ENAIIDLLRT LRDEGHLILV ATHNLGSVPE FCDNVILVNR TVLAAGPTHN TFTQSNLEKT
FGGVLRHINL GGSHLHDDDD VRSVTVLTDD ERPAVFYGST KSDPPASRTI PEEKQP
|
|---|
| |