Gene PC1_1900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1900 
Symbol 
ID8132843 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp2192797 
End bp2194191 
Gene Length1395 bp 
Protein Length464 aa 
Translation table11 
GC content53% 
IMG OID644865189 
Productsodium:dicarboxylate symporter 
Protein accessionYP_003017477 
Protein GI253688287 
COG category[R] General function prediction only 
COG ID[COG1823] Predicted Na+/dicarboxylate symporter 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATTTTC CGCTACTCAT AAATATTCTG CTATTTGTCG TATTACTACT CGGACTCGGT 
TACGCCAGCC GTAACCCCTC CTGGAGTCTG GCAAAGAAAG TGTTGCTGGG TTTGGTTGTC
GGGGTATTAT TTGGCCTGGC GCTGCATCTG ATTTATGGCG GCGACAACCC GGTCATTAAA
CAGTCCATCT CATGGTTTAA CATCGTCGGT AATGGCTATG TGCAGCTGTT ACAGATGATC
GTCATGCCGC TGGTATTTAT CTCCATCCTG AATTCTGTTG CCAAGCTGCA TAATGCGTCG
TCATTAGGGA AAATCAGCCT ATTAACGCTT TCCACCCTGT TGATCACCAC GCTGATTTCT
GCGTTGGTCG GCGTCTTTGT GACTAACTTG TTTGGCCTGA CGGCTACCGG GTTAGTGCAA
GGCGCACAAG AAACCGCGCG ATTAACGGCG ATTGAAAACA ACTATGCCGG TAAAGTTGCT
GACCTTAACG TTCCTCAGCT TATCCTGTCA TTCATTCCTA AAAACCCGTT TGCTGAGCTG
ACCGGCGCTA ACCCGACGTC CATCATCAGT ATCGTCGTCT TCGCGGCGTT CCTTGGCGTG
GCCGCCCTGC AACTACTGAA AGATGACGCG GTGAAAGGCG AACGTGTGTT AACTGCCATT
GATACGCTGC AATCCTGGGT GATGAAGCTC GTTCGTCTGG TGATGAAATT GACCCCATAC
GGCGTCATGG CGTTAATGAC CAAAATGGTC GCCAGTTCTA ACCTTCAAGA CATCCTCAAG
TTGGGCAGTT TCGTTGTCGC GTCCTATCTG GGGCTGGCGA TTATGTTCGG CGTCCATGCG
CTGATTCTGT CTTTTACGGG CATCAATCCG GCGCGTTTTT ATCGTAAAGT CTGGCCAGTG
CTGACGTTCG CATTTACCAG CCGCTCCAGT GCAGCGACGA TCCCACTCAG CATTGAGGCG
CAAACGCGCC GTATTGGCGT ACCGCAATCT ATCGCCAGCT TCGCAGCCTC TTTCGGTACG
ACCATCGGTC AGAATGGTTG TGCAGGGCTT TATCCGGCAA TGCTGGCCGT CATGGTCGCC
CCAACGGTCG GCATTAACCC GCTGGATCCT GTCTGGATCG CGACGCTGGT CGGTATCGTC
ACAATCAGTT CTGCCGGCGT AGCCGGTGTC GGTGGCGGCG CAACCTTTGC CGCACTCATC
GTCCTGCCTG CTATGGGGCT GCCAGTGACC CTCGTTGCGC TGCTGATCTC CATTGAGCCA
CTTATCGATA TGGGCCGTAC TGCGCTTAAC GTCAGCGGTT CGATGACGGC CGGTACCGTC
ACCAGCCAAC TGATGAAACA AACAGATAAA ACGGTTTTCA ACGCGCAGGA TGACGCGGAA
CTGACACACC GTTAA
 
Protein sequence
MNFPLLINIL LFVVLLLGLG YASRNPSWSL AKKVLLGLVV GVLFGLALHL IYGGDNPVIK 
QSISWFNIVG NGYVQLLQMI VMPLVFISIL NSVAKLHNAS SLGKISLLTL STLLITTLIS
ALVGVFVTNL FGLTATGLVQ GAQETARLTA IENNYAGKVA DLNVPQLILS FIPKNPFAEL
TGANPTSIIS IVVFAAFLGV AALQLLKDDA VKGERVLTAI DTLQSWVMKL VRLVMKLTPY
GVMALMTKMV ASSNLQDILK LGSFVVASYL GLAIMFGVHA LILSFTGINP ARFYRKVWPV
LTFAFTSRSS AATIPLSIEA QTRRIGVPQS IASFAASFGT TIGQNGCAGL YPAMLAVMVA
PTVGINPLDP VWIATLVGIV TISSAGVAGV GGGATFAALI VLPAMGLPVT LVALLISIEP
LIDMGRTALN VSGSMTAGTV TSQLMKQTDK TVFNAQDDAE LTHR