| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1871 |
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| Symbol | |
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| ID | 8132814 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2159676 |
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| End bp | 2160332 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644865160 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_003017448 |
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| Protein GI | 253688258 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.163248 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTTTTGT TTTCCGCGAC TATAAAGATG ATGAATAAAT TCCCTTTTAA AAATCACAAA
GTTAAACGAT TCAGCTCACA GCCGGCAAGA AAAAGGCAAC CTGACAATGC GCCGCGCCGA
ATCGTTTTGT TCAATAAACC CTTCGATGTC CTGCCACAAT TCACTGATGA AGCCGGACGC
CGCACGCTAA AAGATTACAT TCCGGTTAGC GGTATTTATG CCGCCGGTCG TCTGGATCGC
GACAGCGAAG GTCTGATGAT TCTCACCAAT GACGGCAAAC TTCAGGCTCG ACTGACCCAG
CCAACGCAAA AAACAGCCAA AATCTACTAT GTTCAGGTCG AAGGTATACC TGACGATGCC
GCACTGACGC GCTTTCGTAC GGGCCTGGAT CTGAATGATG GCAAAACGCT GCCCGCTGGG
GCAGAAATCG TACCTGAGCC TAGCTGGCTA TGGCCGCGTA ATCCCCCCAT ACGTGAACGT
AAAAGCATCC CTGACTGTTG GCTAAAAATA ACGCTGTATG AAGGTCGTAA TCGACAGGTC
CGTCGTATGA CGGCAAATAT CGGTTATCCT ACATTACGTC TGATTCGGTA CGGCATGGCC
AATCAGACGG TAGAAAACCT GTTACCCGGA GAATGGAAGG AGATAGCGGA TGTTTAA
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| Protein sequence | MLLFSATIKM MNKFPFKNHK VKRFSSQPAR KRQPDNAPRR IVLFNKPFDV LPQFTDEAGR
RTLKDYIPVS GIYAAGRLDR DSEGLMILTN DGKLQARLTQ PTQKTAKIYY VQVEGIPDDA
ALTRFRTGLD LNDGKTLPAG AEIVPEPSWL WPRNPPIRER KSIPDCWLKI TLYEGRNRQV
RRMTANIGYP TLRLIRYGMA NQTVENLLPG EWKEIADV
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