| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1860 |
|---|
| Symbol | potC |
|---|
| ID | 8132803 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 2147649 |
|---|
| End bp | 2148425 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644865149 |
|---|
| Product | spermidine/putrescine ABC transporter membrane protein |
|---|
| Protein accession | YP_003017437 |
|---|
| Protein GI | 253688247 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.165984 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGGAC GCTTAATCCG CGGTGGGTTT ATGTCCATCA TTTACGCTTA CCTGTACATC
CCGATCATTA TTCTGATCGT GAACTCCTTT AATCAGGCAC GCTTCGGCAT CAACTGGCAG
GGATTTACGC TGGACTGGTA TCGGCTACTG ATGAACAACG ACAGCCTGCT TCAGGCCGCA
CAGCACTCAC TGACGATGGC CATTTTTTCC GCAACGTTCG CGACGATGAT TGGCTCCCTG
ACCGCCGTCG CACTGTATCG CTATCGCTTT CGCGGCAAAC CTTTTGTCGG CGGCATGCTG
TTCGTGGTGA TGATGTCGCC GGATATCGTT ATGGCCATCT CTCTGCTGGT GCTGTTTATG
CTACTGGGTA TCTCGCTTGG GTTCTGGTCA CTACTGTTTT CCCACATCAC GTTCTGCCTG
CCGTTTGTGG TTGTCACCGT CTATTCGCGT CTGAAAGGTT TTGACGTACG GATGTTGGAA
GCCGCGCGCG ACCTGGGTGC CAGTGAAGTC ATTATTCTGC GCAAAATCAT TCTGCCGCTG
GCGATGCCAG CAGTAGCGGC CAGTTGGTTG CTCAGCTTTA CGCTCTCGAT GGATGACGTG
GTGGTTTCCT CGTTTGTCAC CGGCCCCGCG TATGAAATTC TGCCGTTGAA GATTTACTCG
ATGGTTAAGG TTGGCGTCTC CCCTGAAGTC AACGCGCTGG CGACGATTTT GCTTATTCTA
TCGCTCGTGC TGGTACTCAG TAGCCAGCTG ATTTTACGTG ACCGCACCGG AAAATAA
|
|---|
| Protein sequence | MTGRLIRGGF MSIIYAYLYI PIIILIVNSF NQARFGINWQ GFTLDWYRLL MNNDSLLQAA
QHSLTMAIFS ATFATMIGSL TAVALYRYRF RGKPFVGGML FVVMMSPDIV MAISLLVLFM
LLGISLGFWS LLFSHITFCL PFVVVTVYSR LKGFDVRMLE AARDLGASEV IILRKIILPL
AMPAVAASWL LSFTLSMDDV VVSSFVTGPA YEILPLKIYS MVKVGVSPEV NALATILLIL
SLVLVLSSQL ILRDRTGK
|
|---|
| |