| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1859 |
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| Symbol | potD |
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| ID | 8132802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2146515 |
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| End bp | 2147558 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644865148 |
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| Product | spermidine/putrescine ABC transporter periplasmic substrate-binding protein |
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| Protein accession | YP_003017436 |
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| Protein GI | 253688246 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.112661 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAGT GGCCACACCT ACTGGCAGCC TGCGCGCTGG CGTTTGGCAT CAGCACCGCC
AATGCCAACG ACGGTAAAAC GCTCTATTTC TATAACTGGA CCGAATACGT GCCGCCGGGC
CTGTTGGAAC AGTTCACTAA AGAAACGGGC ATCAAGGTGA TTTACTCCAC CTATGAATCC
AACGAGAGTA TGTATGCCAA GCTGAAAACC TATAAGGACG GCGCCTACGA TCTGGTTGTG
CCATCAACCT ATTTCATCTC CAAGATGAGT AAGGAAGGCA TGCTGCAAAA GATTGATACC
AGCAAGCTCA GCAACTTCCA TAATCTCGAT CCGAACCTGC TGCACAAGTC CTTCGATCCG
AACAATGACT ACTCTATTCC CTATATCTGG GGCGCGACGG CGATTGGCGT TAATCATGAA
GTGATTGACC CCGCCAGCGT TACCCGCTGG GCCGACCTGT GGGATACGAA GTATAAAAAC
AGCCTGCTGC TGACGGACGA CGCGCGCGAA GTATTCCAAA TCGCCCTGCG TAAGCTGGGT
TACTCCGCGA ATACCACCGA TCCGAAAGAA ATTGAGGCTG CGTATAAAGA GCTGCAAGCG
CTGATGCCGA ATGTGCTGAC GTTCAATTCA GACAACCCCG GCAACCCGTT TATCGAAGGC
GAAGTCAATC TGGGTATGGT GTGGAACGGC TCTGCCTACG TGGCGCGTCA GGCAGGTACA
CCGCTAGATG TTATCTGGCC AGCAGAAGGC GGCATCTTCT GGATGGATAG CCTGGCGATT
CCAGCCAACG CCAAAAACGT TGACGGCGCG ATGAAGCTGA TCGATTTCCT GCTGCGCCCG
GAAGTGGCGG CACAGGTTGC GGAAACTATC GGCTATCCAA CGCCGAATCT GGCAGCGAAA
AAACGACTGC CGGCGGAGGT TTCAGGGGAC AAAACGCTGT ACCCGGATGA TGAAACCATC
GCCAAAGGCG AATGGCAGAA CGACGTTGGC AGCGCCAGTA CGCTGTATGA AACCTACTTC
CAGCAGCTAA AAGCGGGTCG TTAA
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| Protein sequence | MKKWPHLLAA CALAFGISTA NANDGKTLYF YNWTEYVPPG LLEQFTKETG IKVIYSTYES
NESMYAKLKT YKDGAYDLVV PSTYFISKMS KEGMLQKIDT SKLSNFHNLD PNLLHKSFDP
NNDYSIPYIW GATAIGVNHE VIDPASVTRW ADLWDTKYKN SLLLTDDARE VFQIALRKLG
YSANTTDPKE IEAAYKELQA LMPNVLTFNS DNPGNPFIEG EVNLGMVWNG SAYVARQAGT
PLDVIWPAEG GIFWMDSLAI PANAKNVDGA MKLIDFLLRP EVAAQVAETI GYPTPNLAAK
KRLPAEVSGD KTLYPDDETI AKGEWQNDVG SASTLYETYF QQLKAGR
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