| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1848 |
|---|
| Symbol | yebU |
|---|
| ID | 8132791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 2132240 |
|---|
| End bp | 2133694 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644865137 |
|---|
| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
|---|
| Protein accession | YP_003017425 |
|---|
| Protein GI | 253688235 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
|---|
| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGCAAAAT TTACTCCAGC CAACCTGCCT GCTGAATTTC TCGACACGAT GCGAGACATC
ATGCCTTCAT CGCTTTCGAT GGACGATTTC ATTGCCGCCT GCCAGCGTCC GCTGCGCCGG
AGCATCCGCG TCAATACGTT AAAAATTAGC GTCGAGGCCT TTCTTCGGCT CGTGCAGCCT
TATGGCTGGC AGCTTGAGCC AATTCCCTGG TGTCAGGAAG GCTTCTGGCT GCTGAATGCG
GAAGAGGAAA ACACGCGGCT AGGTAATACG CTGGAACACC TGAGCGGGCT GTTTTACATT
CAGGAAGCCA GCTCCATGTT GCCCGTCAGT GCCCTATTTC ATCGTAACGA AGCGCTGGAA
ACGGTTTTGG ACGTCGCGGC CGCACCAGGT TCTAAAACAA CGCAAATTGC AGCACGGCTG
GATAACAAAG GGGCTATCGT CGCCAACGAA TATTCAGCTA GCCGGGTAAA AGTGCTGCAT
GCCAACATCA GCCGCTGCGG CGTCAGTAAT ACCGCGATGA CACACTTCGA CGGACGCGTT
TTTGGCGCAG CGCTGCCGGA GTATTTTGAT GCAATACTGT TGGATGCGCC GTGTTCTGGT
GAAGGTGTGG TACGTAAAGA TCCGGCGGCG ATGAGCCACT GGTCGCCAGA GAGTATTACC
GAGATTGCCG CCACCCAGCG CGACCTGATT CTGAGCGCGT TCCATGCCCT GAAGCCCGGC
GGCGTGATGA TTTACTCCAC CTGTACGCTG AATAAGCAGG AAAACCAGCA GGTCTGCCAT
TGGCTACAGG CGCAATTTCC CGATGCGTGT GAATTTGAAT CGTTACGGGA TCTCTTCACC
GATGCCGAAC GCGCCACAAC GGAAGACGGC TTCCTACACG TTTTCCCGCA GATTTATGAC
AGCGAAGGCT TTTTTGTTGC CCGTTTGCGG AAAACCGCTA GCGTGCCGCC GCTGCCGCGC
CCGGGTTATA AAGTCGGTAA ATTCCCGTTC TCTCCGGTTG CCCCCAAAGA TTGCGTGCCA
CTCATACAGG CGGCACGTAA ACAGGGCATT CACTGGGATG AGACATTACT GCAACTGTGG
CAGCGTGATA GCGAGATCTG GCTTTTCCCT GCGGCGCTAG CCTCCGCTTT TGGCAACATC
AAATTCTCGC GTATTGGCAT TAAACTCGCC GAACGCTTCC CTAAAGGTTT CCGCTGGCAA
CATGAAGCGG TTGTCGCTCT GGCCGATCCA AACGCAAATA ATGCCTACGC ACTGACCGAT
GACATCGCCT GCGAGTGGTT CCAGGGCAAA GACTGCTATC CCGAACCGCT GCCTACTGCA
GATGAGCTGA TTTTAACCTA CCAGAACACG CCAGTCGGTC TGGCCAAGCG TATCAATAGC
CGGATAAAAA ACAGCCTGCC GCGCGATTTA GTGCGAGATG GCGCATCCTC CGCCCAGCAA
CTTGCTAAAG AATAA
|
|---|
| Protein sequence | MAKFTPANLP AEFLDTMRDI MPSSLSMDDF IAACQRPLRR SIRVNTLKIS VEAFLRLVQP
YGWQLEPIPW CQEGFWLLNA EEENTRLGNT LEHLSGLFYI QEASSMLPVS ALFHRNEALE
TVLDVAAAPG SKTTQIAARL DNKGAIVANE YSASRVKVLH ANISRCGVSN TAMTHFDGRV
FGAALPEYFD AILLDAPCSG EGVVRKDPAA MSHWSPESIT EIAATQRDLI LSAFHALKPG
GVMIYSTCTL NKQENQQVCH WLQAQFPDAC EFESLRDLFT DAERATTEDG FLHVFPQIYD
SEGFFVARLR KTASVPPLPR PGYKVGKFPF SPVAPKDCVP LIQAARKQGI HWDETLLQLW
QRDSEIWLFP AALASAFGNI KFSRIGIKLA ERFPKGFRWQ HEAVVALADP NANNAYALTD
DIACEWFQGK DCYPEPLPTA DELILTYQNT PVGLAKRINS RIKNSLPRDL VRDGASSAQQ
LAKE
|
|---|
| |