Gene PC1_1823 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1823 
Symbol 
ID8132766 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp2107889 
End bp2109217 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content51% 
IMG OID644865112 
ProductPTS system, lactose/cellobiose family IIC subunit 
Protein accessionYP_003017400 
Protein GI253688210 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1455] Phosphotransferase system cellobiose-specific component IIC 
TIGRFAM ID[TIGR00359] phosphotransferase system, cellobiose specific, IIC component
[TIGR00410] PTS system, lactose/cellobiose family IIC component 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.312785 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTTCCT TATATCAATC AACGATTGCC GCTATCGAAC AATCGATTAC CCCGCTGGCC 
GGACGTTTAG GGCAACAAAA ATATGTGATC GCTATCCGCG ATGGCTTTAC TGCCGCGCTC
CCTTTTATGA TCATCGGTTC ATTTATGCTG GTGTTTATTT TCCCTCCCTT CTCTGCCGAT
ACGACTGTCG GATTTGCTCG TACCTGGCTG GATTTCTCTA TCACCTATCG CGCAGAACTG
ATGCTGCCTT TTGAGCTCAG TATGGGCGTG ATGACATTTT TCATCTCCGT GGGCGTGGGT
GCCAGTCTGG GACGACAATT TAATCTCGAT TCCGTCATGT CTGGCTTGCT GGCATTTATG
GCTTTCCTGC TCGTCGCCGC CCCTTACGCC GATGACAAAA TCTCTACCGA GTATCTGTCA
GGACAAGGGA TCTTCACCGC TTTACTGACC TCCATCTACG CCACCCGTGT GTATGCAGCG
CTGAAACAAC ACAACATTAC CATTCGCTTA CCGAAAGAAG TGCCGACAGG TGTCGCCCGC
TCGTTTGAAA TCCTCATTCC CGTGTTGGTG ATTGTCGCAA CGCTGCACCC GCTCAATCTT
TTCATTGAAG CGCAAACGGG CATGATCATT CCCGAAGCGA TTATGCACCT GCTGGCACCG
CTGGTGTCCG CCTCAGACTC GCTGCCTGCC ATTCTTCTGT CTGTGCTGCT GTGCCAGCTT
TTCTGGTTTT CGGGGATCCA CGGTTCGCTG ATTGTCACAG GCATCATGAA TCCATTCTGG
ATGACCAATC TGGCTGTAAA TCAAGCCGCG CTGGCAGCCG GTGAAGTATT GCCGCATATC
TATTTACAGG GTTTTTGGGA TCACTACCTG TTGATTGGCG GCGTCGGTTC GACGCTACCG
CTGGCATTCC TGCTGTTACG CAGCAAGGTC ACGCATTTAC GCACCATTGG CAGAATGGGC
GTCGTACCGA GCTTCTTTAA CATCAACGAA CCGATCATGT TTGGTGCGCC GATTATCATG
AATCCGATGC TATTCATCCC CTTTGTTTTC GTACCGATGG TGAATGCCGT ATTGGCTTAC
ACCGCGACCA AAATGGGGTG GCTAGCGCAG GTCGTCTCGC TCACGCCGTG GACAACACCC
GCCCCCATTG GCGCATCATG GGCCGCAAAC TGGAGTTTCA GTCCACTCAT TATGTGCCTG
CTGTGCATGG TATTTTCCGC ACTGATGTAT TTGCCGTTCC TGCGAGCCTA CGAACGGTCA
TTACTGAAAA CCGAAGAGAA AAAAATACAG GGTGATTTAT CGCTGACAAA AACGGTGAGG
AGCAATTAA
 
Protein sequence
MSSLYQSTIA AIEQSITPLA GRLGQQKYVI AIRDGFTAAL PFMIIGSFML VFIFPPFSAD 
TTVGFARTWL DFSITYRAEL MLPFELSMGV MTFFISVGVG ASLGRQFNLD SVMSGLLAFM
AFLLVAAPYA DDKISTEYLS GQGIFTALLT SIYATRVYAA LKQHNITIRL PKEVPTGVAR
SFEILIPVLV IVATLHPLNL FIEAQTGMII PEAIMHLLAP LVSASDSLPA ILLSVLLCQL
FWFSGIHGSL IVTGIMNPFW MTNLAVNQAA LAAGEVLPHI YLQGFWDHYL LIGGVGSTLP
LAFLLLRSKV THLRTIGRMG VVPSFFNINE PIMFGAPIIM NPMLFIPFVF VPMVNAVLAY
TATKMGWLAQ VVSLTPWTTP APIGASWAAN WSFSPLIMCL LCMVFSALMY LPFLRAYERS
LLKTEEKKIQ GDLSLTKTVR SN