Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1823 |
Symbol | |
ID | 8132766 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 2107889 |
End bp | 2109217 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644865112 |
Product | PTS system, lactose/cellobiose family IIC subunit |
Protein accession | YP_003017400 |
Protein GI | 253688210 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC |
TIGRFAM ID | [TIGR00359] phosphotransferase system, cellobiose specific, IIC component [TIGR00410] PTS system, lactose/cellobiose family IIC component |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.312785 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTCCT TATATCAATC AACGATTGCC GCTATCGAAC AATCGATTAC CCCGCTGGCC GGACGTTTAG GGCAACAAAA ATATGTGATC GCTATCCGCG ATGGCTTTAC TGCCGCGCTC CCTTTTATGA TCATCGGTTC ATTTATGCTG GTGTTTATTT TCCCTCCCTT CTCTGCCGAT ACGACTGTCG GATTTGCTCG TACCTGGCTG GATTTCTCTA TCACCTATCG CGCAGAACTG ATGCTGCCTT TTGAGCTCAG TATGGGCGTG ATGACATTTT TCATCTCCGT GGGCGTGGGT GCCAGTCTGG GACGACAATT TAATCTCGAT TCCGTCATGT CTGGCTTGCT GGCATTTATG GCTTTCCTGC TCGTCGCCGC CCCTTACGCC GATGACAAAA TCTCTACCGA GTATCTGTCA GGACAAGGGA TCTTCACCGC TTTACTGACC TCCATCTACG CCACCCGTGT GTATGCAGCG CTGAAACAAC ACAACATTAC CATTCGCTTA CCGAAAGAAG TGCCGACAGG TGTCGCCCGC TCGTTTGAAA TCCTCATTCC CGTGTTGGTG ATTGTCGCAA CGCTGCACCC GCTCAATCTT TTCATTGAAG CGCAAACGGG CATGATCATT CCCGAAGCGA TTATGCACCT GCTGGCACCG CTGGTGTCCG CCTCAGACTC GCTGCCTGCC ATTCTTCTGT CTGTGCTGCT GTGCCAGCTT TTCTGGTTTT CGGGGATCCA CGGTTCGCTG ATTGTCACAG GCATCATGAA TCCATTCTGG ATGACCAATC TGGCTGTAAA TCAAGCCGCG CTGGCAGCCG GTGAAGTATT GCCGCATATC TATTTACAGG GTTTTTGGGA TCACTACCTG TTGATTGGCG GCGTCGGTTC GACGCTACCG CTGGCATTCC TGCTGTTACG CAGCAAGGTC ACGCATTTAC GCACCATTGG CAGAATGGGC GTCGTACCGA GCTTCTTTAA CATCAACGAA CCGATCATGT TTGGTGCGCC GATTATCATG AATCCGATGC TATTCATCCC CTTTGTTTTC GTACCGATGG TGAATGCCGT ATTGGCTTAC ACCGCGACCA AAATGGGGTG GCTAGCGCAG GTCGTCTCGC TCACGCCGTG GACAACACCC GCCCCCATTG GCGCATCATG GGCCGCAAAC TGGAGTTTCA GTCCACTCAT TATGTGCCTG CTGTGCATGG TATTTTCCGC ACTGATGTAT TTGCCGTTCC TGCGAGCCTA CGAACGGTCA TTACTGAAAA CCGAAGAGAA AAAAATACAG GGTGATTTAT CGCTGACAAA AACGGTGAGG AGCAATTAA
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Protein sequence | MSSLYQSTIA AIEQSITPLA GRLGQQKYVI AIRDGFTAAL PFMIIGSFML VFIFPPFSAD TTVGFARTWL DFSITYRAEL MLPFELSMGV MTFFISVGVG ASLGRQFNLD SVMSGLLAFM AFLLVAAPYA DDKISTEYLS GQGIFTALLT SIYATRVYAA LKQHNITIRL PKEVPTGVAR SFEILIPVLV IVATLHPLNL FIEAQTGMII PEAIMHLLAP LVSASDSLPA ILLSVLLCQL FWFSGIHGSL IVTGIMNPFW MTNLAVNQAA LAAGEVLPHI YLQGFWDHYL LIGGVGSTLP LAFLLLRSKV THLRTIGRMG VVPSFFNINE PIMFGAPIIM NPMLFIPFVF VPMVNAVLAY TATKMGWLAQ VVSLTPWTTP APIGASWAAN WSFSPLIMCL LCMVFSALMY LPFLRAYERS LLKTEEKKIQ GDLSLTKTVR SN
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