Gene PC1_1788 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1788 
Symbol 
ID8132730 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp2068558 
End bp2069568 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content47% 
IMG OID644865076 
Productdihydroorotate dehydrogenase 2 
Protein accessionYP_003017365 
Protein GI253688175 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0167] Dihydroorotate dehydrogenase 
TIGRFAM ID[TIGR01036] dihydroorotate dehydrogenase, subfamily 2 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.0427694 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCTATC CCGTTATCAA AAAAGCCCTG TTTCAGCTCG ATCCAGAGCG TGCGCATGAG 
CTGACCTTCC AACAATTACG TCGTATTACC AACACGCCTT TTGAATTTCT CGTCCGTCAA 
TCTGTTCCAA CTAAACCGGT TACCTGCATG GGGTTATCTT TTAAAAACCC ACTCGGTCTG 
GCGGCGGGAT TAGATAAAGA CGGCGAATGT ATTGATGCAT TAGGCGCAAT GGGATTTGGT 
TTTATTGAAG TGGGGACGGT CACGCCGCGT CCACAATCCG GTAATGATAA ACCGAGATTA 
TTCCGCGTAG TAGAAGCGGA AGGATTGATC AACCGGATGG GATTCAATAA TAAGGGCGTA 
GATTCTCTGG TCGAGAATGT AAAGAAAACA CGCTTTGGCG GTGTATTAGG GATCAACATC 
GGTAAGAATA AAGATACGCC GGTTGAGCAA GGTAAAGACG ATTATTTGAT CTGTATGGAT 
AAGGTTTATG CTCACGCTGG CTATATCGCG ATCAATATTT CGTCCCCCAA TACGCCGGGA 
TTACGCAGCC TGCAATATGG TGAAGCGCTA GACGATCTTT TGCTGGCGAT AAAGAACAAG 
CAGGCGGAAT TAAAAGAGAG ACATCAAAAA TATGTCCCTG TGGCGGTAAA GATCGCGCCG 
GATCTTTCGG AAGAAGAATT GATCCAAATT GCCGATAGTC TGGTGCGCCA TAACATCGAC 
GGTGTGATTG CCACGAATAC CACGCTCGAC AGAAAACTGA TTCAGGGATT AAACCACTGC 
GGGCAGACGG GAGGATTAAG TGGACGTCCG TTGCAGACAA GCAGCACGGA GATTATCCGC 
CGTTTGTCAC AGGAATTAGC AGGGCGTTTA CCGATTATTG GCGTCGGTGG AATTGATTCT 
TTGGTCGCCG CACGCGAAAA AATGGCGGCT GGCGCATCGC TGGTGCAGAT ATATTCGGGC 
TTTATTTTCC ATGGTCCTCG TCTGATTAAA GATATCGTTA CACATATTTA A
 
Protein sequence
MFYPVIKKAL FQLDPERAHE LTFQQLRRIT NTPFEFLVRQ SVPTKPVTCM GLSFKNPLGL 
AAGLDKDGEC IDALGAMGFG FIEVGTVTPR PQSGNDKPRL FRVVEAEGLI NRMGFNNKGV 
DSLVENVKKT RFGGVLGINI GKNKDTPVEQ GKDDYLICMD KVYAHAGYIA INISSPNTPG 
LRSLQYGEAL DDLLLAIKNK QAELKERHQK YVPVAVKIAP DLSEEELIQI ADSLVRHNID 
GVIATNTTLD RKLIQGLNHC GQTGGLSGRP LQTSSTEIIR RLSQELAGRL PIIGVGGIDS 
LVAAREKMAA GASLVQIYSG FIFHGPRLIK DIVTHI