Gene PC1_1784 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1784 
Symbol 
ID8132726 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp2061300 
End bp2062421 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content44% 
IMG OID644865072 
Productporin Gram-negative type 
Protein accessionYP_003017361 
Protein GI253688171 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00154811 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGAAAC GCAACATTCT TGCAGTAGTA ATCCCAGCTC TGTTAGTCGC AGGCGCAGCC 
AACGCAGCAG AAGTTTATAA TAAAGACGGC AACAAGCTGG ATCTGACTGG TAAAATCACT
GGTCTGCACT ACTTCTCTGA TAACAACGGC AACGATGGCG ATAAAACCTA TGCTCGTCTG
GGCTTCAAAG GTGAAACTCA GATCGCTGAT CAACTGACTG GTTTTGGCCG TTTTGAATAC
CAATTCCAGG GCAACAGAGC TGAAAGCTCT GGCTCTTCCA ACGCCGATAA AACTCGTTAT
GCATTTGCTG GTTTGAAATT TGCTGATGCT GGTTCTTTCG ACTACGGTCG TAACCTGGGC
ATTGCATATG ACGGTATCGC TTATACCGAC GTACTGCCAG AGTTTGGTGG TGATCAATCC
AACTCCGATA ACTTCCTGAC TGGTCGTTCT ACTGGTGTTG CAACTTACCG TAACAGCAAC
TTCTTCGGTT TAGTTGATGG CTGGAACTTT GCTGTTCAAT ACCAAGGTAA AAATAACAGC
GATAGCACAA ACCGCCGCGG CAATATCAAC GAGCAAAATG GTGACGGCTG GGGTATCTCC
TCTTCTTACG ACTCAGATAT CGGTCTGGGT GTTGTAGCAT CTTATGCTGC AATTAACCGT
ACTGATAACC AAAACAACAA TGCGACCACT GGTCGTGGTA AGAAAGCAGA AGCTTGGGCA
ACTGGTCTGA AATATGATGC TAATGCCATC TATTTAGCTG CTACTTACGG TGAATATCGT
AATCTTTCAT ATATCGGTCA AGCATCTGGC CCTAACAGCA CTGTAGTAGC TGGTGACACC
GATGGTTTTG CAGACAAAAC CAAAATCTTT GAAGCTGTTG CACAATACAA CTTCGATTTC
GGTCTGACTC CGTCTCTGGC ATATGTTTCT GGCAAAGCTA AAGATGATGT AAACAATAAA
AATGATTACA TCACCAAATA TGTCAGTGTT GGTGCTACTT ATGCATTCAA CAAAAACATG
TCTACCTATG TTGACTACCA GATCAACCTG ATCAAAGACA ACAACGTATA CGGCATCAAC
GATGACGATA CTGTTGCTGT TGGTCTGACT TACCAGTTCT AA
 
Protein sequence
MMKRNILAVV IPALLVAGAA NAAEVYNKDG NKLDLTGKIT GLHYFSDNNG NDGDKTYARL 
GFKGETQIAD QLTGFGRFEY QFQGNRAESS GSSNADKTRY AFAGLKFADA GSFDYGRNLG
IAYDGIAYTD VLPEFGGDQS NSDNFLTGRS TGVATYRNSN FFGLVDGWNF AVQYQGKNNS
DSTNRRGNIN EQNGDGWGIS SSYDSDIGLG VVASYAAINR TDNQNNNATT GRGKKAEAWA
TGLKYDANAI YLAATYGEYR NLSYIGQASG PNSTVVAGDT DGFADKTKIF EAVAQYNFDF
GLTPSLAYVS GKAKDDVNNK NDYITKYVSV GATYAFNKNM STYVDYQINL IKDNNVYGIN
DDDTVAVGLT YQF