| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1783 |
|---|
| Symbol | |
|---|
| ID | 8132725 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 2059792 |
|---|
| End bp | 2060982 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644865071 |
|---|
| Product | aromatic amino acid aminotransferase |
|---|
| Protein accession | YP_003017360 |
|---|
| Protein GI | 253688170 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1448] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00163536 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGAAA ATATCTCTGC CGCACCGGCC GATCCTATTC TCGGGCTGAC CGATCTTTTC
CGCGCCGATG ACCGCGCGAA TAAAATCAAT CTGGGTATTG GTGTCTATAA AGATGAAACC
GGTAAAACTC CGGTTCTGAC CAGCGTAAAA AAAGCAGAAC AGTATCTGCT GGAAAATGAA
ACCACCAAAA ACTATCTGAG CATTGACGGT CTGCCAGCAT TCGGTCAGTG CACGCAGGAG
CTATTGTTTG GCAAGCAGAA TGCCATCATT GCCGACAAAC GTGCCCGTAC GGCGCAAACC
CCAGGCGGAA CGGGTGCATT GCGCGTAGCG GCGGATTTCA TTGCCAATCA GACATCTGCA
AAGCGCATTT GGATCAGCAA CCCAACCTGG CCAAATCACA ATAACGTCTT CTCTGCCGTC
GGTTTGGAAG TGTGCCAGTA TGACTACTAC GATGCAGCGA ACCATGCGCT GGATTTTGAT
GGCTTGCTGA ACAGCCTGAA CGCAGCACAA GCGGGCGACG TGGTACTGTT CCACGGCTGT
TGCCATAACC CAACCGGTAT CGATCCTACA GCTGAGCAGT GGGCTACGTT GGCTGAGCTG
TCGATAGCGA AAGGCTGGCT GCCGCTGTTT GACTTCGCCT ATCAGGGCTT CGCCCGCGGC
CTCGAAGAAG ATGCGGAAGG TCTGCGTATT TTCGCCGCGA AGCACGATGA ACTGATCGTA
TGCAGTTCGT ACTCTAAAAA CTTCGGTTTG TACAATGAGC GTGTCGGTGC CTGCACGCTG
GTTGCTGCCG ATGCCGCAAC GGCAGATAAA GCATTCAGTC AGGTGAAAGC GGCTATTCGC
GCAAACTACT CTAACCCGCC GTCACACGGT GCGACCGTTG TGGCTACCAT TCTGGGCAAC
GACGCGCTGA AAACCATTTG GGTGCAGGAA TTAACGGCGA TGCGTGAGCG CATTCAGCGT
ATGCGTCAGC TGTTCGTTAA TACCTTGCAG GAAAAAGGCG CGCAGCAGGA TTTCTCCTTC
ATCATCGACC AGAATGGGAT GTTCTCATTC AGTGGCCTGA CCAAAGAGCA GGTTCTGCGT
CTGCGTGACG AATTCGGCGT TTATGCGGTG AATTCTGGCC GTATCAACGT TGCGGGAATG
ACGCCGGAAA ATATGGCTCC GCTCTGCGAA GCGATTGTTG CCGTGCTCTA A
|
|---|
| Protein sequence | MFENISAAPA DPILGLTDLF RADDRANKIN LGIGVYKDET GKTPVLTSVK KAEQYLLENE
TTKNYLSIDG LPAFGQCTQE LLFGKQNAII ADKRARTAQT PGGTGALRVA ADFIANQTSA
KRIWISNPTW PNHNNVFSAV GLEVCQYDYY DAANHALDFD GLLNSLNAAQ AGDVVLFHGC
CHNPTGIDPT AEQWATLAEL SIAKGWLPLF DFAYQGFARG LEEDAEGLRI FAAKHDELIV
CSSYSKNFGL YNERVGACTL VAADAATADK AFSQVKAAIR ANYSNPPSHG ATVVATILGN
DALKTIWVQE LTAMRERIQR MRQLFVNTLQ EKGAQQDFSF IIDQNGMFSF SGLTKEQVLR
LRDEFGVYAV NSGRINVAGM TPENMAPLCE AIVAVL
|
|---|
| |