Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1768 |
Symbol | |
ID | 8132710 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2039012 |
End bp | 2041303 |
Gene Length | 2292 bp |
Protein Length | 763 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644865056 |
Product | hypothetical protein |
Protein accession | YP_003017345 |
Protein GI | 253688155 |
COG category | [R] General function prediction only |
COG ID | [COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) |
TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein [TIGR00361] DNA internalization-related competence protein ComEC/Rec2 |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.44185 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCATGGC AAGGGACGAT GTCGGTAAAT AGTCTGGCTT GGGCTGGCGT GTTGGGTATT CTGCCACTGC TTTTTTTGCC GCATATCCCG GTGCAAACGC TGTTATGGTG GGGAATGGGG CTATCCATCT GTGTGATTCT GGGTGGATAT CGTTATGCTG GGATGCGGTT TATCGCGCTT GTTGCTGTGA GTTTTTGTTG GGCAGCGTTG AATGCTCAAA CTCTGCTGCT ACAAATTGAT CGTTTCACGC AGGATTCGGT TAACGCTGTC GCGACAATAA GCAGCATACG GTTCAGCGAA CACGGTGATG ACGGGATCAC GGTTCGGTTG GAAGAGATAA ACCAGCAGCG AATCTTCCCA CCGCTGTATG CCCAACTGAC CCTATCACCA GCGATGGAAA ACTGGTGCGG TGGCCAACGC TGGGCGATAA CCGTCAATTT TCGTCCTATT CATAGTCGAC TAAATGAAGG CGGCTTTGAT AGCCAACGCT GGGCGATAGC CAAACGACAA CCGTTATCAG GTCGTGTGCT AACGGCAAAG GTGATAGATA GCCACTGTGA TTTCCGCCAG CGCACGATCG CGCAGGCGGA ACAGCAGGTT CAGGGCTTAG CGTGGCGTTC TATTTTATTG GCGCTGACGT TTGGCGAGAT GAAGACGGTT AGTCCGGAAC TCAAGGCGCT CCTTCAGAAT ACGGGTACGA TGCACCTGAT GGCGATCTCT GGCCTCCATA TCGTGCTTGC GGGGTTGGTC GGATGGGGAA TGGCGCGAGC GTTGCAGTAT GGCTTTTCCG TTCAGTGGAT TGGCTATCGT TTCCCATTGC TCACGAGTGC CGTGGTTGCC TGGGGATATG TCTGGCTGGC AGGGGGGAAT CCTCCTGCGG TGCGATCTGC GCTGGCGCTC AGCGTGTGGG TTTGCCTAAA AGTCTGGAGC GTTAACTGCT CAGCCTGGCA GGTTTGGCTA TGGTGCGTTG CGCTGATTCT GGTGAGCGAT CCATTGAGCG TGTTGTCAGA CAGCTTTTGG CTCTCTTGTC TTGCGGTGGC ATCGCTCATT TTCTGGTTTC AGTGGGCACC GCTTCCCCAC CGACTACAGA CGCGGCGACG ATGGTTCTGG CTACGCTGGA TCCACCTGCA AACGGGAATC ACCCTGCTAT TGATGCCCCT GCAGCTTCAT ATCTTTCATG GTTTTAGCAT TACCTCTCTG CCCGCCAACC TATGGGCGGT GCCTTTAGTG TCTTTCGTCA CCACACCGCT CATTTTGCTG GCATTGAGCA CGATGGCATT TGTACCACTA GGTGAAATGC TTTGGTGGTT GGCAGATATT TCGTTGCGTG TGGTGTTCGC ACCGTTGACG TATCTACAGA CAGGGTGGAT CTATCTTGAT GCATCGTTAC TGCTAGGGAG CGTCGCGGGA TGGGGGGCCG TCGTAATATG GCGCTTTCGC TGGTGGCGAA TCCATCCGAT GAGTATCGGC GTGCTGATTT TAGTTTTATT GGCTTTCCGC ATAAAGAGCA ATGAACCTGC CTGGCGTGTG GATATGCTGG ATGTCGGCCA TGGGCTGGCT ATCGTGATTG AGCAGCGTGG GAAGGCGGTG CTGTACGATA CGGGAAATCG CTGGGAAGGA GGCGATATGG CGACGCGGGA AATTCTGCCT TATCTGAGAT GGCGGGGAGT CGACGTGGAA AACATTATCC TGAGCCACAG TCATATGGAT CACATTGGGG GACTGGAGAC GCTACAGGCA GCCTATCCTG AAGCAACGAT CTATAGCGCA ACCAATGCGA TGAATCATCG TTCTTGCCTA CGTGGCGAGC GTTGGCGCTG GCAGGATCTC ACGTTTACCG TGCTGTGGCC GTTAGCACCC GTTGCTCGAG CGGAAAATAA CGATTCCTGT GTGATCCGCG TTGATGATGG CAAACACAGT GTCTTATTGA CGGGCGATCT GGAATCAGAT GCAGAAATGG CATTAGTGAG GCTAGAACGT AGTGCGCTGC GTGCGAATTT GTTACAAATC CCTCATCATG GCAGTAAAAC GTCATCCTCG CCCCCTTTCA TCCGTGCGGT TAATGCTGAG TTCGTTATCG CCTCTGCGGC ACGTTATAAC CCGTGGCGGC TGCCTTCAGT AAAGATTGTT GAGCGATACC GACAATATGG TTACTCATGG CTGGATACCG CATCATTTGG GCAGCTAAGC GCTCGTTTTT TCAGCGATTC ATGGCATATT CTGCGGTTCA GAGATCACAT ATCGCCTCGT TGGTATCATC AGTGGTTTGG CGTAGGGCGG TATAATGAGT AA
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Protein sequence | MSWQGTMSVN SLAWAGVLGI LPLLFLPHIP VQTLLWWGMG LSICVILGGY RYAGMRFIAL VAVSFCWAAL NAQTLLLQID RFTQDSVNAV ATISSIRFSE HGDDGITVRL EEINQQRIFP PLYAQLTLSP AMENWCGGQR WAITVNFRPI HSRLNEGGFD SQRWAIAKRQ PLSGRVLTAK VIDSHCDFRQ RTIAQAEQQV QGLAWRSILL ALTFGEMKTV SPELKALLQN TGTMHLMAIS GLHIVLAGLV GWGMARALQY GFSVQWIGYR FPLLTSAVVA WGYVWLAGGN PPAVRSALAL SVWVCLKVWS VNCSAWQVWL WCVALILVSD PLSVLSDSFW LSCLAVASLI FWFQWAPLPH RLQTRRRWFW LRWIHLQTGI TLLLMPLQLH IFHGFSITSL PANLWAVPLV SFVTTPLILL ALSTMAFVPL GEMLWWLADI SLRVVFAPLT YLQTGWIYLD ASLLLGSVAG WGAVVIWRFR WWRIHPMSIG VLILVLLAFR IKSNEPAWRV DMLDVGHGLA IVIEQRGKAV LYDTGNRWEG GDMATREILP YLRWRGVDVE NIILSHSHMD HIGGLETLQA AYPEATIYSA TNAMNHRSCL RGERWRWQDL TFTVLWPLAP VARAENNDSC VIRVDDGKHS VLLTGDLESD AEMALVRLER SALRANLLQI PHHGSKTSSS PPFIRAVNAE FVIASAARYN PWRLPSVKIV ERYRQYGYSW LDTASFGQLS ARFFSDSWHI LRFRDHISPR WYHQWFGVGR YNE
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