| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1758 |
|---|
| Symbol | |
|---|
| ID | 8132700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 2029920 |
|---|
| End bp | 2030687 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644865046 |
|---|
| Product | YcgR family protein |
|---|
| Protein accession | YP_003017335 |
|---|
| Protein GI | 253688145 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5581] Predicted glycosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGTGG AGATGAAAGC GGTGAATGAA AATTTGAAAG AGCAGTTTGT TAAGCGCAAC
AAACTGGCTA TCTGTGCAAC GCTGCGCGAA TTAAAGAAGA ATGATACGTC TCTGATGGTT
CATCATTCTC ACGGTCAGTT CATCAGTAAA ATTCTTGACG TTGTCCCGGA CAACAATCTG
TTTGTCTTCG ATTTAGGCGG CATTGAGCGT GAAAATAACC GAGCGCTGTA TGCCGGGTCG
CTCTCTTTTG TCGCAGAGCC TGCGGGTGCA AAAGTTGAAT TTAATGCCGA AATTGCGAAA
ACGGTAACTT ACGATGGGCT GCCAGCCTTC AGCGCGCAGA TTCCTGAACT GCTTTATCTT
ATCCAACGTA GAACCTATTT CCGTATCAAT ACGCCACTGT GGCCACCATT GACGTGCCGT
GGCGAACTGC CGGATGAAAG CGTTTTCCTG TTTACTATTA AAGATCTCTC GTTGGGTGGG
TTGAGTCTGT ATACCGACCG TGACACCACC GGGTTGTTGA CCGAAGGCGA CATCATTAAA
AGCGTGGAAA TGGATCTCGC CGATCACGGT TTCTTCTGCG TCGATTTGCA GTTCGTCGGT
CAGGCAATGG TGAAGGTCGT CGATAACAAA GGCGAAGTGC AACTCACGCA GCGTCTGAGC
TTCAAATTCC CTTCACTGAA CGCGGCACAG GAGCGGGATC TTCAGCAGGT GATTTTTGAG
CTGGAAAGAT TACAAAACGA AAAGAAAAAG CGGTTCCAGG AATTGTAA
|
|---|
| Protein sequence | MMVEMKAVNE NLKEQFVKRN KLAICATLRE LKKNDTSLMV HHSHGQFISK ILDVVPDNNL
FVFDLGGIER ENNRALYAGS LSFVAEPAGA KVEFNAEIAK TVTYDGLPAF SAQIPELLYL
IQRRTYFRIN TPLWPPLTCR GELPDESVFL FTIKDLSLGG LSLYTDRDTT GLLTEGDIIK
SVEMDLADHG FFCVDLQFVG QAMVKVVDNK GEVQLTQRLS FKFPSLNAAQ ERDLQQVIFE
LERLQNEKKK RFQEL
|
|---|
| |