| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1750 |
|---|
| Symbol | |
|---|
| ID | 8132692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 2021885 |
|---|
| End bp | 2023255 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644865038 |
|---|
| Product | Citrate carrier protein |
|---|
| Protein accession | YP_003017327 |
|---|
| Protein GI | 253688137 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3493] Na+/citrate symporter |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0020544 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACGA CTGATGATTC ATATATTGTT GTAAATAATG AGGCGGCTGG GAAGGTTTCA
TTAAAGGAAA AATGGTGGCA CATTCTGGAT ACCTACAAAG TAGGTATTAT TCCGGTGCCG
CTTTTTGTGC TGGCGGGGGT ATTAATTGGT ATCGACTGCC TGAATGGTAA GTTGCCGAGC
GACATCGTTG TGATGGTGGC GACGCTGGCA TTCTTTGGAT TTGCCTGTGG TGAATTTGGC
AAGCGTCTGC CAATTATCGG CAAGATGGGG GCAGCGGCAA TCTGTGCGAC CTTCATTCCT
TCGGCGATGG TGCATTATGG CCTGCTGCCG GACGTTGTTG TTGAATCCAC GACCAAGTTC
TACAAAAGTA CCAACATCCT ATATCTCTAC ATCTGCTGCA TTATTGTCGG CAGTATTATG
AGCATGAATC GGCAGACGCT GATTCAGGGC TTCCTGCGTA TTTTCTTCCC TATGCTGTGC
GGTGAAGTTG CCGGGATGCT GGTGGGCATG GGCGTAGGTA TTGCACTGGG TCTGGATCCG
TTCCAAATCT TCTTCTTCCT GATTCTGCCG ATTATGGCGG GTGGGGTAGG TGAAGGCGCC
ATTCCGCTGT CTATCGGCTA TGCCACGATT CTGCACATGG ATCAGGGGGT AGCACTGGGC
CGCGTCTTGC CAATCGTGAT GCTGGGTAGC CTGACCGCCA TCATCATTGC CGGTGTGCTG
AATCAGTTGG GTAAACGCTA TCCACACCTG ACTGGCGAAG GCGAACTGAT GCCAAATAAA
GGCAACAATC TGGGCAACGG TGAAAGCAGT GCCCCTGCTT CTGCCTTTAG CGGTAAAGCC
GATGTGACGA CCATTGCCTC TGGCGCGCTG CTGGCCATCC TGCTGTATAT GATCGGTATG
CTTGGGCACA AAGTCATTGG CCTGCCTGCG CCAGTCGGCA TGCTGTTTGC CGCCGTGCTG
GTGAAGTTGG CTCACGGCGT TTCACCGAAA ATGCTGGAAG GCTCTCAGGT GGTTTATAAA
TTCTTCCAGA CTTCCGTGAC GTACCCGATT CTGTTTGCCG TTGGCGTGGC GATTACACCG
TGGCAGGAAC TGGTGAACGC TTTCACGATT CAAAACCTGC TGGTGATTAT TTCTACCGTA
GTCACGCTGG TCGCGACGGG CTTCTTTGTG GGTAAAAAGA TCGGTATGCA CCCGATTGAT
GTTGCCATTA TTTCCTGCTG CCAGAGCGGA CAGGGCGGTA CCGGTGACGT CGCGATTCTG
ACGGCGGGTA ACCGTATGGT GCTGATGCCT TTCGCGCAGA TTGCCACACG TATCGGCGGT
GCCATTAACG TTTCGATTTC ACTACTGGTA CTCGCCAACT TTTTAGTCTG A
|
|---|
| Protein sequence | MSTTDDSYIV VNNEAAGKVS LKEKWWHILD TYKVGIIPVP LFVLAGVLIG IDCLNGKLPS
DIVVMVATLA FFGFACGEFG KRLPIIGKMG AAAICATFIP SAMVHYGLLP DVVVESTTKF
YKSTNILYLY ICCIIVGSIM SMNRQTLIQG FLRIFFPMLC GEVAGMLVGM GVGIALGLDP
FQIFFFLILP IMAGGVGEGA IPLSIGYATI LHMDQGVALG RVLPIVMLGS LTAIIIAGVL
NQLGKRYPHL TGEGELMPNK GNNLGNGESS APASAFSGKA DVTTIASGAL LAILLYMIGM
LGHKVIGLPA PVGMLFAAVL VKLAHGVSPK MLEGSQVVYK FFQTSVTYPI LFAVGVAITP
WQELVNAFTI QNLLVIISTV VTLVATGFFV GKKIGMHPID VAIISCCQSG QGGTGDVAIL
TAGNRMVLMP FAQIATRIGG AINVSISLLV LANFLV
|
|---|
| |