| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1716 |
|---|
| Symbol | |
|---|
| ID | 8132658 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1977415 |
|---|
| End bp | 1979181 |
|---|
| Gene Length | 1767 bp |
|---|
| Protein Length | 588 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644865004 |
|---|
| Product | cysteine/glutathione ABC transporter membrane/ATP-binding component |
|---|
| Protein accession | YP_003017293 |
|---|
| Protein GI | 253688103 |
|---|
| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4988] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02857] thiol reductant ABC exporter, CydD subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.238801 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA CCAGACAGCA AGAACTGACC GCCTGGCTGA AGCAGCAGAG TAAGCTGGCG
CAACGTTGGC TACGCATTTC ACTGCTGCTT GGGTTCCTGA GCGGTGCATT AATCGTTGCA
CAAGCCTGGC TGTTAGCGAC GCTGCTCCAT GCCTTGATCA TCGAGCATGC TCCCCGTGAA
TCTCTGCTCT CCCCTTTTCT TCTTCTGATC GCCACATTTG TTCTGCGTGC GCTTAACAGC
GTGTTACGCG AGCGTGTCGG TTTTCTATGC GGGCAAGCCG TTCGACAGCA AATTCGTAAG
CTGGTACTGG ATCGATTGCA ACAGCTTGGC CCTGCCTGGG TACAAGGCAA ACCTGCGGGC
AGTTGGGCAA CGATGATTCT TGAGCAGGTT GATGATATGC AGGATTATTA CGCCCGCTAC
CTGCCGCAAA TGTATCTTGC CGCACTGATC CCGTTGCTTA TTTTAATCAC GATCTTCCCA
CTCAATTGGG CTGCAGGCTT GATTCTGTTT CTCACCGCCC CACTCATTCC GCTTTTTATG
GCGCTGGTCG GTATGGGTGC GGCGGATGCC AACCGACGTA ACTTTCTGGC GTTGGCACGC
CTGAGCGGAC ATTTCCTCGA TCGCCTACGC GGGATGGAGA CACTACGCCT GTTCCATCGA
GGCGAGGCTG AAACCGAACA AATCCGCCAC GCGTCCGAAG ATTTTCGCAG TCGCACGATG
GAAGTGCTGC GCATGGCATT TCTTTCCTCG GGCGTACTGG AGTTTTTTGC CTCCATTTCG
ATCGCCGTTG TCGCCGTCTA TTTCGGTTTC TCTTATCTCG GAGAACTGGA TTTCGGTCAT
TACGGCATGG GTGTGACACT CTTCGCCGGT TTTCTCGTGC TGATTCTGGC GCCGGAGTTT
TTTCAGCCTT TACGCGATCT GGGCACGTTC TATCATGCCA AGGCTCAGGC TATCGGCGCA
GCGGAATCGC TGGTGACCTT TTTAGCCGAG GAAGGTGAAA CGGTAGGCTT TGGCACCCAA
ACATTCAGCA GTGATAGCGC TATTGCCATT CGGGCGGAAG ATTTGGTCGT CCTCGCGCCC
AATGGCACAC CACTCACTCA ACCGTTGACG TTCGATATTC GTGCAGGCGA GCGTATCGCG
CTGGTCGGCC TCAGCGGCGC AGGAAAAAGC TCGCTGCTTA ATGCCTTGCT GGGGTTCCTG
CCCTATCGCG GCTCATTAAC AGTCAACGGT CAGGCCCTGA ACACGCTAAC GCCTGAATCA
TGGCGTAAGC AGTTAAGCTG GGTTGGGCAA AATCCCCATT TACCGGAACA GACGCTGCGC
AGCAATATTC TGCTGGGTAA CCCGCAGGCC AGCATTGTGG AGTTACAGCG GGCAATTGAG
CGCGCCTATG TGCAGGAATT CTTACCACAG CTCCCACAAG GGCTGGAAAC CACGATCGGT
GACGGCGCAG CGCGCTTATC CGTCGGTCAG GCGCAGCGCG TTGCCGTTGC CCGTGCGCTT
ATCCACCCTT GCAACTTATT GCTGCTGGAT GAACCATCAG CCAGTCTGGA TGCCCACAGC
GAAGAGCTGG TTATGACGGC GTTAAACGAC GCTGCGCGTC ACCAGACCAC GCTGCTGGTG
ACGCACCAGC TCGCCGATAT CACCGAATAT GATGCAATTT GGGTAATGGA CGGCGGTCAG
CTAGTCCAAC AAGGTGATTA TCAAACACTC CGAGCCGAAG CAGGCCCCTT TGCAACGCTG
CTGGCACAAC GACAGGAGGC ACTGTAA
|
|---|
| Protein sequence | MKKTRQQELT AWLKQQSKLA QRWLRISLLL GFLSGALIVA QAWLLATLLH ALIIEHAPRE
SLLSPFLLLI ATFVLRALNS VLRERVGFLC GQAVRQQIRK LVLDRLQQLG PAWVQGKPAG
SWATMILEQV DDMQDYYARY LPQMYLAALI PLLILITIFP LNWAAGLILF LTAPLIPLFM
ALVGMGAADA NRRNFLALAR LSGHFLDRLR GMETLRLFHR GEAETEQIRH ASEDFRSRTM
EVLRMAFLSS GVLEFFASIS IAVVAVYFGF SYLGELDFGH YGMGVTLFAG FLVLILAPEF
FQPLRDLGTF YHAKAQAIGA AESLVTFLAE EGETVGFGTQ TFSSDSAIAI RAEDLVVLAP
NGTPLTQPLT FDIRAGERIA LVGLSGAGKS SLLNALLGFL PYRGSLTVNG QALNTLTPES
WRKQLSWVGQ NPHLPEQTLR SNILLGNPQA SIVELQRAIE RAYVQEFLPQ LPQGLETTIG
DGAARLSVGQ AQRVAVARAL IHPCNLLLLD EPSASLDAHS EELVMTALND AARHQTTLLV
THQLADITEY DAIWVMDGGQ LVQQGDYQTL RAEAGPFATL LAQRQEAL
|
|---|
| |