| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1698 |
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| Symbol | |
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| ID | 8132640 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1958293 |
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| End bp | 1959024 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644864986 |
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| Product | cationic amino acid ABC transporter, periplasmic binding protein |
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| Protein accession | YP_003017275 |
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| Protein GI | 253688085 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.176126 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAAAAT TAGTGCTCGC CACCTTACTT GCAGGAATCG CCTTCAGCGC CACCGCGGCA
GACACCATCC GTTTTGCCTC ATCAGCCACC TACCCGCCCT TTGAATCACT GGATGCCAAC
AACGAAATCG TCGGTTTCGA TATGGATCTA GCGAAAGCGT TGTGCAAACA AATGCAGGCA
ACCTGTACGT TCACCAATCA AGCATTTGAC AGCCTGATTC CGGCGCTGAA ATTCCGTCGC
TATGACGCGG TGATTTCCGG TATGGACATC ACGCCAGAAC GCAGCAAGCA GGTCACGTTC
ACGCAGCCTT ACTATGCCAA CTCTGCTGTC GTTATCGCGC AAAAAGGGAA ATTCAGCGAT
TTTGCGGCGA TGAAAGGCAA ACGTATTGGT ATGGAAAACG GCACGACGCA CCAGAAATAC
ATGCACGATA AGCACCCGGA AGTACAAACC GTCTCTTATG ACAGTTACCA GAATGCGGTA
CTGGATCTGA AAAACGGCCG TATCGACGGT GTATTCGGTG ATACCGCTGT CGTCAACGAA
TGGATTAAGA CGAACCCTGA ACTGGCGACG GTTGGTGAAC ACGTGACTGA CGCGGAATAC
TTCGGTACCG GATTGGGCAT CGCCGTTCGT CCCGATGACA AAGCACTGCT GGAGAAACTG
AATAACGCAC TGGATGCCAT CAAAGCGGAC GGCACGTACA AAGCCATCAA TGACAAGTGG
TTCCCGCAAT AA
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| Protein sequence | MKKLVLATLL AGIAFSATAA DTIRFASSAT YPPFESLDAN NEIVGFDMDL AKALCKQMQA
TCTFTNQAFD SLIPALKFRR YDAVISGMDI TPERSKQVTF TQPYYANSAV VIAQKGKFSD
FAAMKGKRIG MENGTTHQKY MHDKHPEVQT VSYDSYQNAV LDLKNGRIDG VFGDTAVVNE
WIKTNPELAT VGEHVTDAEY FGTGLGIAVR PDDKALLEKL NNALDAIKAD GTYKAINDKW
FPQ
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