Gene PC1_1692 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1692 
Symbol 
ID8132634 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp1951854 
End bp1952963 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content51% 
IMG OID644864980 
Productputrescine transporter subunit: periplasmic-binding component of ABC superfamily 
Protein accessionYP_003017269 
Protein GI253688079 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0687] Spermidine/putrescine-binding periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCACCC AACGTAAAAA ATGGCTATCG GGTGTTGTTA CCGGCTTGCT GATGGCCGCG 
TCCGTCACCG CATCTGCGGA AGAGAAAACG CTGCATGTTT ATAACTGGTC CGACTATATC 
GCGCCGGACA CGTTAGCCAA TTTCCAGAAA GAAACCGGCA TTAAAGTCGT CTATGACGTG 
TTTGATTCCA ACGAAGTGTT GGAAGGCAAG CTCATGGCGG GCAGCACGGG TTTTGATCTG 
GTGGTGCCTT CTGCCAGCTT CCTGGAGCGC CAGCTCTCTG CGGGAGTTTT TCAGCCATTA 
GACAAGAGCA AGTTACCGAA TTACAAAAAT CTGGATCCTG AGCTGATGAA GCTGATTGCG 
CAGCACGATC CAGAGAATAA ATATGCCCTG CCTTACCTGT GGGCGACCAC GGGCATCGGC 
TATAACGTTG AGAAAGTCAA AGCAGCGCTA GGGGCTGACG CACCGGTTGA CAGCTGGGAT 
CTGGTACTGA AACCAGAGAA CCTGGAAAAA CTGAAAAGCT GTGGCGTCTC CTTCCTGGAT 
GCACCGGAAG AGATCTTTGC GACCGTGCTG AATTATCAGG GTAAAGACCC AAACAGCACC 
AAACCGGGTG ATTACACCAC GTCTGCGACC GACCTGCTGC TGAAACTGCG TCCAAGCATT 
CGCTACTTCC ATTCATCGCA GTACATCAAC GATCTGGCAA ACGGCGATAT CTGCGTCGCA 
GTCGGCTGGG CGGGCGATAT CCTGCAGGCA GGAAACCGTG CGAAAGAAGC GAAGAACGGG 
GTGAATATCC AATACAGCAT TCCGAAAGAA GGCGCGTTGG CATTCTTTGA TGTTCTCGCT 
ATTCCAAAAG ATGCTAAAAA TCTGGATGAA GCCTATGCGT TTCTGGATTA CCTGATGAAG 
CCGGAAGTGA TGGCGGGAAT CAGTAACCAT GTGTATTACG CGAGCGGTAA TCTGGCATCC 
TTGCCGTTGG TGAACGCAGA AATTCGTAAT AACCCGGGCG TTTATCCGCC GGCGGATGTG 
CGTGCCAAAC TGTTTACGCT TAAGGTGCAA TCTCCTCAGA TTGACCGCAC GCGTACACGT 
GCATGGACTA AGGTTAAGAG CGGCAAATAG
 
Protein sequence
MFTQRKKWLS GVVTGLLMAA SVTASAEEKT LHVYNWSDYI APDTLANFQK ETGIKVVYDV 
FDSNEVLEGK LMAGSTGFDL VVPSASFLER QLSAGVFQPL DKSKLPNYKN LDPELMKLIA 
QHDPENKYAL PYLWATTGIG YNVEKVKAAL GADAPVDSWD LVLKPENLEK LKSCGVSFLD 
APEEIFATVL NYQGKDPNST KPGDYTTSAT DLLLKLRPSI RYFHSSQYIN DLANGDICVA 
VGWAGDILQA GNRAKEAKNG VNIQYSIPKE GALAFFDVLA IPKDAKNLDE AYAFLDYLMK 
PEVMAGISNH VYYASGNLAS LPLVNAEIRN NPGVYPPADV RAKLFTLKVQ SPQIDRTRTR 
AWTKVKSGK