| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1673 |
|---|
| Symbol | rimO |
|---|
| ID | 8132615 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1928023 |
|---|
| End bp | 1929351 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644864961 |
|---|
| Product | ribosomal protein S12 methylthiotransferase |
|---|
| Protein accession | YP_003017250 |
|---|
| Protein GI | 253688060 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.548183 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAATA TCGCCCCCCC ACAACCACGT ATCGGCTTTG TTTCCCTCGG CTGCCCGAAA
AACCTCGTCG ACTCCGAGAG GATTCTGACC GAACTGCGTA CTGAAGGTTA TCAGGTCGTC
CCCCGCTATG ACGACGCTGA ACTAGTGATC GTCAATACCT GTGGTTTTAT TGACAGCGCC
GTACAAGAGT CGCTGGAAGC CATCGGCGAA GCGCTGAATG AGAACGGTAA AGTTATCGTA
ACAGGCTGTC TGGGTGCCAA AGAAAATCAA ATACGCGAAG TGCATCCAAA AGTTCTGGAA
ATTACCGGTC CGCACAGCTA CGAGCAGGTG CTGTCGCACG TGCATCAATA TGTTCCTAAA
CCGACGCACA ACCCGTTTAC CAGTTTAGTC CCTGAGCAGG GCGTAAAACT CACGCCGCGC
CATTACGCGT ATCTGAAAAT TTCAGAAGGC TGTGACCACC GCTGCACATT CTGCATCATC
CCATCTATGC GTGGCGATTT GGATAGCCGC CCAATCGGTT CGGTGCTGGA TGAAGCGAAG
CGTCTGGTTG ATGCCGGCGT AAAAGAGCTG CTGGTAATTT CTCAGGATAC CTCGGCGTAC
GGCGCAGATG TGAAGCAGCG TACCGGTTTT TGGAACGGGC AGCCGGTCAA AACCAGTATG
GTCAGCCTGT GTGAGCAACT GGCGTCGCTG GGCGTGTGGG TGCGCCTGCA TTATGTCTAC
CCTTACCCAC ACGTAGACGA TGTGATCCCA TTAATGGCAG AAGGCAAAAT CCTGCCTTAT
CTGGACATCC CGCTCCAGCA CGCTAGCCCG AAAATTCTCA AGCTGATGAA GCGCCCTGGC
GCAGTCGAAA GAACGCTGGA ACGTATTAAA CGCTGGCGCG AAATCTGCCC GGACTTAACG
CTGCGTTCTA CCTTTATTGT CGGTTTCCCC GGTGAGACGG AAGAAGATTT CCAGATGCTG
CTCGACTTCC TGAAAGAAGC CAAACTCGAC CGCGTGGGCT GCTTTAAATT CAGCCCGGTC
GAAGGTGCTG CGGCAAATGC ATTGCCGGAT CAGGTGCCGG AAGAGGTCAA AGAAGAACGT
TTCCACCGTT TCATGCAGCT TCAACAGGCG ATCTCCGCCC AGCGTTTGCA GGATAAAATT
GGCCGTGAAG TGCTGGTACT GATTGATGAA ATCGACGAAG AAGGCGCGAT TGGCCGCAGC
ATGGCCGATG CTCCTGAAAT CGACGGCGCA GTTTACCTGA ACGGTGAAAC TGGCGTGAAA
GTCGGTGATA TCGTTAAGGT CAAAGTTGAA CACGCTGACG AATACGATCT GTGGGGTAGC
CGAGTATAA
|
|---|
| Protein sequence | MSNIAPPQPR IGFVSLGCPK NLVDSERILT ELRTEGYQVV PRYDDAELVI VNTCGFIDSA
VQESLEAIGE ALNENGKVIV TGCLGAKENQ IREVHPKVLE ITGPHSYEQV LSHVHQYVPK
PTHNPFTSLV PEQGVKLTPR HYAYLKISEG CDHRCTFCII PSMRGDLDSR PIGSVLDEAK
RLVDAGVKEL LVISQDTSAY GADVKQRTGF WNGQPVKTSM VSLCEQLASL GVWVRLHYVY
PYPHVDDVIP LMAEGKILPY LDIPLQHASP KILKLMKRPG AVERTLERIK RWREICPDLT
LRSTFIVGFP GETEEDFQML LDFLKEAKLD RVGCFKFSPV EGAAANALPD QVPEEVKEER
FHRFMQLQQA ISAQRLQDKI GREVLVLIDE IDEEGAIGRS MADAPEIDGA VYLNGETGVK
VGDIVKVKVE HADEYDLWGS RV
|
|---|
| |