Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1652 |
Symbol | |
ID | 8132594 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 1901232 |
End bp | 1902365 |
Gene Length | 1134 bp |
Protein Length | 377 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644864940 |
Product | bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein |
Protein accession | YP_003017229 |
Protein GI | 253688039 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG4668] Mannitol/fructose-specific phosphotransferase system, IIA domain |
TIGRFAM ID | [TIGR01003] Phosphotransferase System HPr (HPr) Family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0538047 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCCAGT TGTCACAGCA AGATATTCAT TTGGGCGCAG CGGCCAGTAA TAAGCAGGAA GCCATCCAGC TTGTTGCTTC AGCACTGACC GAGGCCGGGT GCGTTAACGC AGGGTATGTC GACGGCATGC TACAGCGCGA ACAGCAGACA TCCACCTATT TGGGAAGCGG CATTGCTATC CCTCACGGCA CCACCGATAC CCGCGATCTG GTATTGAAGA CCGGGGTTCA AGTATTCCAG TTTCCTCAGG GTATCGCCTG GGGTGAAGAT CAAACCGCCT ATGTGGTGTT GGGGATTGCA GCCCGCTCTG ATGAACACCT TGCGCTGCTG CGTCAGCTGA CTCACGTTCT GAGCGACGAT CGCGTAGCGG CACGTTTGGC AAGCACCACA TCAGCAGAAG AACTGCGTAG CTTGCTGATG GGCGAGCAAC AGCTGGCAGA ATTCCGCTTT GACACCTCGC TGATTGCGCT GGACGTGGCG ACCGATAACC TGCTGACCCT TCAGGCGCTG AATGCCGGTC GTCTTCAGCA GGTCGGTGCA GCAGACGCCA GCTTCGTCAG CACCGCTGTC AGCAACAAGC CGCTGAATCT GGGACAAGGT GTATGGTTCA GCGATAGCGC TGTCGGTAAT CTCAGCAGCG CGGCGGCAGT CGCTCGTCCA GCGACGCCTT TCAGCGTTGA CGGTGAAAAC GTGGCGTTAC TGGTAACGGT AGCTGCGGCT GACGATCAGG CTTTTGCGCC GATCGATTAC CTGAGCAATC TGCTGATTGC ACAAAAAGCA GAACGGCTGC TGACGGCTGA TGCACCGACG CTGCTGGCTC TCTTGACCAG CGATGTACCG GAAGAAAGCG AAGTGCTGAC AGCGGAATTT ACCATTCGTA ACGAACACGG CCTGCACGCG CGTCCGGGCA CCATGCTGGT GAATGTGATC AAACAGTTCA CCAGTGAGAT TACGGTGACC AATCTGGATG GCACAGGCAA ACCGGCAAAT GGCCGCAGCC TGATGAAAGT CGTCGCGCTG GGCGTGAAAA AAGGTCACAA ACTGCGCTTC ACCGCCAGCG GTAGCGATGC AGAACAAGCA CTGGCTGCTA TTGGCGACGC AATTACGTCC GGTTTGGGCG AGGGGGCAGC ATGA
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Protein sequence | MFQLSQQDIH LGAAASNKQE AIQLVASALT EAGCVNAGYV DGMLQREQQT STYLGSGIAI PHGTTDTRDL VLKTGVQVFQ FPQGIAWGED QTAYVVLGIA ARSDEHLALL RQLTHVLSDD RVAARLASTT SAEELRSLLM GEQQLAEFRF DTSLIALDVA TDNLLTLQAL NAGRLQQVGA ADASFVSTAV SNKPLNLGQG VWFSDSAVGN LSSAAAVARP ATPFSVDGEN VALLVTVAAA DDQAFAPIDY LSNLLIAQKA ERLLTADAPT LLALLTSDVP EESEVLTAEF TIRNEHGLHA RPGTMLVNVI KQFTSEITVT NLDGTGKPAN GRSLMKVVAL GVKKGHKLRF TASGSDAEQA LAAIGDAITS GLGEGAA
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