| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1640 |
|---|
| Symbol | |
|---|
| ID | 8132582 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 1888014 |
|---|
| End bp | 1889204 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644864928 |
|---|
| Product | bicyclomycin/multidrug efflux system |
|---|
| Protein accession | YP_003017217 |
|---|
| Protein GI | 253688027 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily
[TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAATTAC GCCGTTCTTC TCATCTCGGG CTGATCTTTA TTCTTGGCCT GATTTCGATG
CTAATGCCCT TAGCCATCGA TATGTATTTA CCTGCGTTAC CGACTATTGC CAACGAGTTT
GGCGTGGAGG ATGGGCACGT CCAAATGACG CTCAGTACCT ATGTACTGGG GTTTGCTATA
GGCCAGATGT TCTACGGGCC GATGGCGGAT AGTCTGGGGC GTAAACCTGT CATTCTTGGT
GGTACGCTGG TTTTTGCGTT CGCAGGCGTG GCCTGTGCGC TGGCGCAAAC GGTAGAGCAG
CTTATCTACA TGCGCTTCCT GCACGGAGTT TCTGCAGCAG CAGCGGCGGT GGTGATTAAT
GCACTGATGC GCGATATGTT CTCGCGGGAT GATTTTTCTC GCATGATGTC GTTTGTCGTG
CTGGTGATGA CGGTCGCACC GCTCATTGCA CCGATTGCTG GTGGCTGGCT GTTGCTGTGG
TTTAGCTGGC ATTCTATTTT CTGGACGATC TCTGGTGCGG CGTTTTTGGC AGCAGCGCTG
ATTTTCTTTT TTATCAAAGA AACCTTACCG CCTGCGAAGC GGCAGAAATT TCATCTGCGC
ACCACCATCG GGAATTTTGC CATCCTCTTC CGCCACAAGC GGGTGTTCAG CTATATGGTG
GCGAGCGGAC TGTCGTTTTG CGGCATGTTT TCCTTCCTGA GCGCCGGGCC GTTTGTGTAT
ATCAACCTGT ATGGTGTGTC ACCTCAGAAT TTTGGCTATT ACTTTGCCCT GAACGTCGTC
TTTCTGTTTG TGGTGACATT GTTTAACAGC CGCAATGTGC GACGGTTGGG GGCGTTGGCG
ATGTTCCGTG CGGGGCTGGT GATCCAGTTT GCGATGGGAA TATGGCTGGT GATTGTCTGC
CTGTTCGATC TCGGCTTCTT ACCGCTGGTG TTTGGCGTAG CGCTGTTTGT CGGCTGTATT
GCGATGGTTG CGTCGAATGC GATGGCGGTC ATCCTTGATG ATTTCCCCCA TATGGCAGGC
ACGGCCTCGT CGCTAGCAGG AACGCTGCGC TTCGGTCTTG GTGCGATTGT AGGCGTTCTC
CTCTCGCTGG CCTCATTCAA CAGCGCCTGG CCGATGGTGT TATCGATGGC ACTCTGTTCG
ATTGGTGCCT TTCTGCTGTA TCTGTACGCG AACCGCTCGG CAGCGTCCTG A
|
|---|
| Protein sequence | MQLRRSSHLG LIFILGLISM LMPLAIDMYL PALPTIANEF GVEDGHVQMT LSTYVLGFAI
GQMFYGPMAD SLGRKPVILG GTLVFAFAGV ACALAQTVEQ LIYMRFLHGV SAAAAAVVIN
ALMRDMFSRD DFSRMMSFVV LVMTVAPLIA PIAGGWLLLW FSWHSIFWTI SGAAFLAAAL
IFFFIKETLP PAKRQKFHLR TTIGNFAILF RHKRVFSYMV ASGLSFCGMF SFLSAGPFVY
INLYGVSPQN FGYYFALNVV FLFVVTLFNS RNVRRLGALA MFRAGLVIQF AMGIWLVIVC
LFDLGFLPLV FGVALFVGCI AMVASNAMAV ILDDFPHMAG TASSLAGTLR FGLGAIVGVL
LSLASFNSAW PMVLSMALCS IGAFLLYLYA NRSAAS
|
|---|
| |