| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1639 |
|---|
| Symbol | |
|---|
| ID | 8132581 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 1887278 |
|---|
| End bp | 1887973 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644864927 |
|---|
| Product | 16S rRNA pseudouridylate synthase A |
|---|
| Protein accession | YP_003017216 |
|---|
| Protein GI | 253688026 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGATTGG ACAAATTTTT ATCCCAGCAG TTGGAAATTA GTCGTTCACT GGTGGCGCGT
GAGCTCCACG CGCAGCGCGT TACCGTAGAT GGTGAAGTGG TAAAAAGCGG TGCGTTCAAG
TTATCCCCTG AACATAACGT TGAATTTGAT GGTAACCCGT TGAAACAGCA GAACGGTCCG
CGTTATTTCA TGTTGAATAA GCCTCAGGGC TACGTCTGTT CAACGGACGA TCCCGATCAT
CCGACTATTC TCTATTTTAT GGATGTGCCG GTGGCGTACA AACTGCATGC GGCAGGCCGA
CTGGATATCG ATACCACGGG ATTGGTGCTG TTAACTGATG ATGGGAAATG GTCGCATCGT
ATTACCTCGC CTAAGCATCA GTGTGAAAAG ACCTATCTGG TAACGCTGGA GCAGCCGCTG
GCTGAGGATA CTGCCGCACA ATTTACGGCA GGCGTGCAGT TGCATAACGA GAAGAATCTC
ACCAAACCCG CTACGCTTGA GAAGATAACG GATCATGTTG TTCGACTGAC GATTAGCGAA
GGTCGCTATC ATCAGGTGAA AAGGATGTTT GCGGCGGTGG GGAATCGGGT CGTGGAACTA
CACCGCGAGC GTATTGGTGA CATCTGGCTG GATAGCGAAC TGGAACCGGG AGAATTCCGG
GAATTAAGTG ATGAAGAGAT CGCCAGCGTA AAATAA
|
|---|
| Protein sequence | MRLDKFLSQQ LEISRSLVAR ELHAQRVTVD GEVVKSGAFK LSPEHNVEFD GNPLKQQNGP
RYFMLNKPQG YVCSTDDPDH PTILYFMDVP VAYKLHAAGR LDIDTTGLVL LTDDGKWSHR
ITSPKHQCEK TYLVTLEQPL AEDTAAQFTA GVQLHNEKNL TKPATLEKIT DHVVRLTISE
GRYHQVKRMF AAVGNRVVEL HRERIGDIWL DSELEPGEFR ELSDEEIASV K
|
|---|
| |