| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1631 |
|---|
| Symbol | |
|---|
| ID | 8132572 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1878205 |
|---|
| End bp | 1879434 |
|---|
| Gene Length | 1230 bp |
|---|
| Protein Length | 409 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 644864918 |
|---|
| Product | integrase family protein |
|---|
| Protein accession | YP_003017208 |
|---|
| Protein GI | 253688018 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGTC AGACAAAGCC CCTGAACAAT ACTGAGGTCA AAAGCGCCAA GGCAACTGAC
CGTGCCATCA CCCTCTACGA TGGAGATGGT TTAGAATTAC AGGTCACTCC GAGCGGTTCA
AAACTCTGGC GTTTTCGCTA CTACAAACCC TTCACTCGCA AACGTGCAAT GATTAGCCTT
GGCGCTTACC CTTCGGTATC TCTTGCCGAA GCACGTAAGC TTCGTGAAGA TGCACGACTT
CTTCTTAGCA AAGACGTTGA TCCGCAGGAG CATAAGCAAG CAGAGCAATC ACGGCAAAAA
AATGCTACAG AAAACACATT TGAAAAAGTG GCTGCCGAAT GGTTTAAAAC TAAAGAATCA
GCAGGTTTGG CAACACATAC GTTGAACGAT ATCTGGCGAT CCATGAGCAA GTATGTGTTC
CCACACATTG GCTCTATGCC TATTGCTAAC ATCACGGCTC AACGATTTAT TGGAGCGTTA
GAACCCACTC ATGCCTCTGG CAGGCTTGAA ACTGTAAAAA GGCTGAGTCA GCGTATTAAT
GAAGTCATGG ATTATGCCCT CAACTCTGGT CTGGTATCTG TAAATCCAGC CGCACGAATT
GGACGAACAT TCCATAAGCC GAAGGTGAAG CATCGCCCTG CCCTCTTGCC AGAGCAATTA
CCACTTCTGA TGAAAACACT GTCATTTGCC AGCATTGGGC GACAAACCCG TTGCCTTATC
GAATGGCAAT TACTCACCAT GACTCGGCCA GCCGAAGCTG CCGAATCACG CTGGGATGAA
ATCGATTTTG ACGCAAAAGA ATGGCGTATT CCTGCTGGCC GTATGAAGAT GAAGCGTGAG
CACGTTATCC CACTCTCAGA GCAAGCGCTG GGGATTCTGG AAGTCATGAA GCCCATCAGT
AAGCACAGAG ATTATGTCTT CCCCGGATAT CGTAATCCAC TTGAGCCGAT GAACAGCCAG
ACAGCGAACA TGGCACTCAA ACGTATGGGC TTCAAAGATA TGCTCGTAGC TCATGGTATG
AGAGCCATTG CTTCGACCAT CCTCAATGAA AAAGGATTTC CCCCTGATGT GATCGAAGCA
GCGTTAGCGC ATATCGATAC TAATGAAGTC AGGAGAGCCT ATAACAGGGC GCAGTATCTT
GAACAGCGCA GAGAAATGAT GGCTTGGTGG GGAGAGCATG TTGAGTCAGC TTCATATGGT
AAAACGAGCA TCATTTCTGT CGCTGGCTAA
|
|---|
| Protein sequence | MARQTKPLNN TEVKSAKATD RAITLYDGDG LELQVTPSGS KLWRFRYYKP FTRKRAMISL
GAYPSVSLAE ARKLREDARL LLSKDVDPQE HKQAEQSRQK NATENTFEKV AAEWFKTKES
AGLATHTLND IWRSMSKYVF PHIGSMPIAN ITAQRFIGAL EPTHASGRLE TVKRLSQRIN
EVMDYALNSG LVSVNPAARI GRTFHKPKVK HRPALLPEQL PLLMKTLSFA SIGRQTRCLI
EWQLLTMTRP AEAAESRWDE IDFDAKEWRI PAGRMKMKRE HVIPLSEQAL GILEVMKPIS
KHRDYVFPGY RNPLEPMNSQ TANMALKRMG FKDMLVAHGM RAIASTILNE KGFPPDVIEA
ALAHIDTNEV RRAYNRAQYL EQRREMMAWW GEHVESASYG KTSIISVAG
|
|---|
| |