Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1626 |
Symbol | |
ID | 8132567 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 1874406 |
End bp | 1874891 |
Gene Length | 486 bp |
Protein Length | 161 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644864913 |
Product | type VI secretion system effector, Hcp1 family |
Protein accession | YP_003017203 |
Protein GI | 253688013 |
COG category | [S] Function unknown |
COG ID | [COG3157] Hemolysin-coregulated protein (uncharacterized) |
TIGRFAM ID | [TIGR03344] type VI secretion system effector, Hcp1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTAATT ATGCATACAT GACTATCGAA GGTAAATCAC AGGGATTGAT TTCTGAGGGT TGCTCCACAT TAGAATCTAT TGGTAACCGA TATCAGGCAG GACATACCGA TGAAATCATG ATCTTGGCTT TCAACCATAT GATGAGCAAT GATGGTCATG CAGTCCATAA TCCGATCACC CTGGTAAAAC CTATCGATAA GTCAACGCCG TTACTGGCAA TGGCATTGAA CGAGCAAGAG AAGGTCAAAG TGTTGATCGA CTTTTACCGC ACGACGCAAC ATGCCAAGCA AGAGAAGTTT TTCTCCATTC AGATCAATGA TGGACTCATA TCTGATATCA ACCTCGTTAT GCCCAACATC ATTGATGATG GTGCTGGCCT GATATTAGAG CATATCTCTA TCAGGTATAA AGATGTGACA TGGACGCACC ACAAAGCCGG GACGTCTGGT TATGCACTGT GGGAAATGAC GAAGTTCATG AACTAA
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Protein sequence | MANYAYMTIE GKSQGLISEG CSTLESIGNR YQAGHTDEIM ILAFNHMMSN DGHAVHNPIT LVKPIDKSTP LLAMALNEQE KVKVLIDFYR TTQHAKQEKF FSIQINDGLI SDINLVMPNI IDDGAGLILE HISIRYKDVT WTHHKAGTSG YALWEMTKFM N
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