| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1590 |
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| Symbol | |
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| ID | 8132531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1843503 |
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| End bp | 1844933 |
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| Gene Length | 1431 bp |
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| Protein Length | 476 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644864878 |
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| Product | hypothetical protein |
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| Protein accession | YP_003017168 |
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| Protein GI | 253687978 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00267858 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGATCGA TCCAAGACCG TTTCATGAAA AAATTAAAAG ATACAGACTG GTATAAAAAG
CGTTACTCCA ACCGTGTTCT CTTCTGGAGA GAAATCTCAC CGCTCGCCTT CCCTATCTTT
ATTGAAGGCC TTTGCGTCGT GTTAATGGGG GTTTTCAGCA CCTTCTTGGT CAGCTGGCTG
GGGAAAGAAG CGATGGCGGC CGTCGGTCTG GCTGATAGCT TCAATATGGT CATCATCGCC
TTCTTTACCG CCGTCGCGTT GGGGACCGCC GTTGTTGTGG CTTTCAGCAT AGGACAACGC
AATAGAAAGC AGGCGCGTTC TGCTGCTCGC CAGTCGATGT CATTACTGGT TCTGTCATCG
TTTCTGTTAG TCGCGTTAGT TGAATTCGCC GGTTCAGCGA TTATCGATCT GATCGCCGGA
CAGGCCGACG CACAGGTTAA AGCACTCGCC CTCACGTTCC TTCGCTGGAC AGTATGGGGA
TACCCTGCTG TCGCCATCGC GTTGGTAGGC TGTGGCGCAT TGCGGGGTGC CGGCAATACC
AAGTTACCCA TGGTCATCAA CATTGGGATG AACATCCTCA ATATTGCCAT CAGCAGCCTA
CTGATTTACG GTGCCTTTTC CTGGAATGGC CTCGGTTTTA TTGGTGCTGG TATCGGGATT
ACCATTTCAC GTTATATCGG TGCGGTATTC GTGATTCTGA CGCTGATGCA CGGTTTTAAC
GGCGCGCTAC GTATTCCCTT CAAGTCTTAC TTTGCACCTT TTACCCTGTC AATCCTCTAT
GAAGTGCTCA GTATCGGTAT TCCCGCCAGC ATAGAATCCG TGATGTTTAA CATCGGCAAG
CTGATCACAC AGCGCTTTGT GGCGGGTATG GGAACCGAAG TCATCGCCGG AAACTTTATT
GCTTTCTCTA TCTCAACGCT GATCAACCTT CCCGGCAATT CACTCGGCGC AGCCGCCACC
ATTATTGTGG GCACACGGCT GGGGAAAGGC CAAATCATGC AATCGACCCG CCAATTGAAG
TATATCTTCT GGCTGTCCAA TATTGGGCTA TGCGCACTCG CCGTATTATC GGTCCCCAGT
GCCAGCTTTT TGGCATCGTT TTACACCAAT GAGCCGGAAG TTATCGAAGT GGCAAAACAT
CTCTTGTGGC TCAACGCGCT ATTTATGCCA ATCTGGGGAG CGGCCTGGGT GCTCCCTGCC
GGCCTGAAAG GGGCGAAAGA CGCCAGCTAC ACCATGTGGG TGGCAATGGC AGGCATGTGG
GGATGTCGGG TCATCGCAGG CTATATCCTC GGTGTGATGC TTGGTTTTGG CGTGATTGGC
GTGTGGATGG GGATGTTTTT TGACTGGATT GTCCGCGGCT TCTTCTATTA CCGCCGCCTG
ATGAGCGGAC GCTGGCTATG GCGTTATCGC TCCCCCACGG ACAAAGCATA G
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| Protein sequence | MRSIQDRFMK KLKDTDWYKK RYSNRVLFWR EISPLAFPIF IEGLCVVLMG VFSTFLVSWL
GKEAMAAVGL ADSFNMVIIA FFTAVALGTA VVVAFSIGQR NRKQARSAAR QSMSLLVLSS
FLLVALVEFA GSAIIDLIAG QADAQVKALA LTFLRWTVWG YPAVAIALVG CGALRGAGNT
KLPMVINIGM NILNIAISSL LIYGAFSWNG LGFIGAGIGI TISRYIGAVF VILTLMHGFN
GALRIPFKSY FAPFTLSILY EVLSIGIPAS IESVMFNIGK LITQRFVAGM GTEVIAGNFI
AFSISTLINL PGNSLGAAAT IIVGTRLGKG QIMQSTRQLK YIFWLSNIGL CALAVLSVPS
ASFLASFYTN EPEVIEVAKH LLWLNALFMP IWGAAWVLPA GLKGAKDASY TMWVAMAGMW
GCRVIAGYIL GVMLGFGVIG VWMGMFFDWI VRGFFYYRRL MSGRWLWRYR SPTDKA
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