Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1587 |
Symbol | |
ID | 8132528 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1840172 |
End bp | 1841059 |
Gene Length | 888 bp |
Protein Length | 295 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644864875 |
Product | threonine and homoserine efflux system |
Protein accession | YP_003017165 |
Protein GI | 253687975 |
COG category | [R] General function prediction only |
COG ID | [COG5006] Predicted permease, DMT superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00642491 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCTTAT TTTCCCACCG CTCCTCATCG TTTGTACCGG TCTTGCTCAT CATTATCTCA ATGCTTTCTA TCCAAAGCGG CGCGGCTTTG GCCAAGAGTC TGTTTCCACT CATTGGTGCT ACCGGCGTAA CGGCATTGCG TCTGGGAATT GGTACGATCA TTCTGTGCGT CATCTTCAAA CCGTGGCGAA TGCGCTTTAG CAGTAACCGC CTGCCGCTGC TGGTGTATGG CATCACGCTG GGCGGGATGA ACTTTCTGTT CTATCTCTCA CTGCAGACGG TGCCGCTCGG CATTGCTGTT GCACTCGAGT TCACCGGCCC GCTTGCCGTT GCTATGTTAG CTTCACGCAG GCCTATCGAT TTTCTATGGG TTTTTCTGGC CGTTGCCGGG CTATGGTTCT TATTACCGCT GGGTCACAAT ATCGGCAATG TTGATTTGGT GGGCGCGGCT TGCGCCGTGG GTGCGGGTGC CTGTTGGGCG CTCTATATTC TGTTTGGGCA AAAAGCAGGC TCAAATCATG GGCCGGGAAC AGTCGCAATC GGCTCCTGCA TTGCCGCACT GATTTTCTGC CCTATTGGCG CATATTATGC GGAAAGCACG CTGTTTTCAC TATCAATACT CCCGCTCGGT GTTGCCGTCG CGGTTCTGTC CACCGCGCTC CCCTACTCTC TGGAAATGGT GGCATTGACT CGTCTACCCG CCAGAACGTT CAGCACCCTC ATGAGCATGG AACCCGCGAT TGCCGCCCTA TCTGGGATCC TCTTCCTCGG TGAGCACCTA TCATTCATAC AGTGGATGGC GCTTATCTTT ATTATCATCG CCTCAATAGG CGCAACGTTG ACAATAAAAC CCGCAGGTGC GGCCAACGTG ACAACTCAAA CAGAATGA
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Protein sequence | MTLFSHRSSS FVPVLLIIIS MLSIQSGAAL AKSLFPLIGA TGVTALRLGI GTIILCVIFK PWRMRFSSNR LPLLVYGITL GGMNFLFYLS LQTVPLGIAV ALEFTGPLAV AMLASRRPID FLWVFLAVAG LWFLLPLGHN IGNVDLVGAA CAVGAGACWA LYILFGQKAG SNHGPGTVAI GSCIAALIFC PIGAYYAEST LFSLSILPLG VAVAVLSTAL PYSLEMVALT RLPARTFSTL MSMEPAIAAL SGILFLGEHL SFIQWMALIF IIIASIGATL TIKPAGAANV TTQTE
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