| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1557 |
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| Symbol | |
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| ID | 8132498 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 1815058 |
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| End bp | 1816425 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644864846 |
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| Product | type I secretion outer membrane protein, TolC family |
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| Protein accession | YP_003017136 |
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| Protein GI | 253687946 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAGGA TCGCGATAAT CGTGCTGTTT GGGCTGCTTT CTTCGGGCGC TAACGCATTA
GGACTGCTTG ATGCCTGGGA ATTAGCGCTG CGTAACGACG CTCAGTTTCG TGCAGCCGGG
TTTGAACGAG CGGCGGGGCT GGAAGAGGAA AATATCGGAC GCGCGAATCT ACTTCCCAAT
CTCCAGTATG GCTATAGCGC TAACCGTAGC CACTCTAAAG TCACTCAAAC GGATAGCTTC
ACCAATAACA CGCTAAAACG CGATTACAAC AGTTACACAT CCACGCTGTC GCTGCGCCAG
CCGCTGCTGG ATTACGCGGC CTGGGCGCGT TATCAACAGG GTGTTGCCCG CACGCTGATG
GCCGACCAGC GGTTTCGCGA TCGCAGTCAG GATCTGATGG TGCGGTTATA TAAAGCCTGG
AGTAGCGCGC TACTGGCGCA GGAAAAACTG CAATTGCTGG ATGCACAACA GCGAGCGTAT
CACGAACAAC TAGCGCTGAA TAAACGCCTC TTGCTGGCGG GCGAAGGGAC GTTAACGGAC
GTGCGGGAAA CGGAAGCGCG TTTTACGCTG ATTGAGGCAC AGCGGATTGA GCAGCAGGAT
AATCTGGATG CTGCGATGAC CGATCTGGAA AATATGACGG GTACGGTGCT GGATATCACG
GCGCTGTATC CTCTGACGCT CACGCAATTA CCGTCAGTGG AATCAGGCAA GCAGACGCTG
GCGCAGTGGC GCGATCTTGC CGTGCAGCAT AATGCCAAAC TGGCGACACA GCGCGAAGGG
CTGGCAGTCA GCCGTTATGA AATCGAACGC AGTCGCGCCG GACATTTACC CACGCTGTCG
CTGGTGGCAT CGTCGCGCAA TAGCCGTTCG GAAAGTGAAT ACAACTACAA TCAGAAATAC
GACACGCAGA GCGTTGGTTT ACAGCTGAAT GTCCCACTTT ATTCCGGTGG TTCCGTTTCG
GCATCGATGC GACAGGCCGC CGCGGAATAT CAGCAAAGTC AGGCGGAGTT GGACGATCAA
ACCAAGCAAA CGCTGGCGGA ATTGAAAAAG TACTACAACC TGTACAACAA CGGGTCGGCG
AAAATTAAGG CCTGGCAAAT GACGGCCTCG TCGGCGCAGG AAGCGGTCAA CGCCACGCGA
TTAAGTGTTG CGGGCGGCGA ACGTATCAAT CTGGATATTC TACTGGCCGA ACAGGATTGG
TATAACGCCC GACGAGAGCT GGCGGAAGCG AAATACAGCT GGCTTCAGGC GTGGCTCCTA
CTGCGCTACA CTGCAGGCAC GTTGAACGAG AAAGATATTC TGGAACTGGC AGCCTGGTTT
CAGCCTGCAA TGAATCCATT GGGTAACGGT AAGATCATCA GTAACTAA
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| Protein sequence | MQRIAIIVLF GLLSSGANAL GLLDAWELAL RNDAQFRAAG FERAAGLEEE NIGRANLLPN
LQYGYSANRS HSKVTQTDSF TNNTLKRDYN SYTSTLSLRQ PLLDYAAWAR YQQGVARTLM
ADQRFRDRSQ DLMVRLYKAW SSALLAQEKL QLLDAQQRAY HEQLALNKRL LLAGEGTLTD
VRETEARFTL IEAQRIEQQD NLDAAMTDLE NMTGTVLDIT ALYPLTLTQL PSVESGKQTL
AQWRDLAVQH NAKLATQREG LAVSRYEIER SRAGHLPTLS LVASSRNSRS ESEYNYNQKY
DTQSVGLQLN VPLYSGGSVS ASMRQAAAEY QQSQAELDDQ TKQTLAELKK YYNLYNNGSA
KIKAWQMTAS SAQEAVNATR LSVAGGERIN LDILLAEQDW YNARRELAEA KYSWLQAWLL
LRYTAGTLNE KDILELAAWF QPAMNPLGNG KIISN
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