Gene PC1_1548 details

Gene Information

• Locus tag: PC1_1548
• ID: 8132489
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 1804883
• End bp: 1805422
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 644864837
• Product: isopentenyl-diphosphate delta-isomerase, type 1
• Protein accession: YP_003017127
• Protein GI: 253687937
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1443] Isopentenyldiphosphate isomerase
• TIGRFAM ID: [TIGR02150] isopentenyl-diphosphate delta-isomerase, type 1

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.51389
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGTTGA CTGAAGTGGT GCTGGTTGAT GAAAATGACA AGCCAACGGG CGTAATGGAA 
AAGCAGGAAG CGCATGTAAA AGGAGCATTA CATCGTGCGA TTACCGTCTA TATTTTCAAC 
TCTCGCCAGC AGTTGTTATT GCAGCAGCGG GCAGAGGAGA AATATCACAG CGGCGGTTTA 
TGGAGCAATA CCTGCTGCAG TCATCCTGCG CCTAGTGAAG AGACGCTGCA GGCGGCACAT 
CGCCGTTTGT ATGAAGAAAT GGGATTACGC TGTGAACTGA CGCCAATGTT TACGCTGACC 
TATCGTCTGC CGTTGGATAA TGGGCTGATT GAGCATGAAC TGGGGCATGT GTATTTTGGT 
GTGACGGATG ACCTTCCGCA GATCAACCCC GATGAAGTGT CGAGCTATGA ATACCAGTCG 
ATAGACAACA TAGCCCAGCG GATGACGGAG ACGCCCGAAC AGTTTACTGC CTGGTTCCAA 
CTGACCTTCG CGCGTATTCC TGCTTACTGG CAAGCATTTC GGTCTGAACA ACCAAATTAA 

 

Protein sequence

MPLTEVVLVD ENDKPTGVME KQEAHVKGAL HRAITVYIFN SRQQLLLQQR AEEKYHSGGL 
WSNTCCSHPA PSEETLQAAH RRLYEEMGLR CELTPMFTLT YRLPLDNGLI EHELGHVYFG 
VTDDLPQINP DEVSSYEYQS IDNIAQRMTE TPEQFTAWFQ LTFARIPAYW QAFRSEQPN