Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1531 |
Symbol | |
ID | 8132472 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 1785345 |
End bp | 1786940 |
Gene Length | 1596 bp |
Protein Length | 531 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644864820 |
Product | extracellular solute-binding protein family 5 |
Protein accession | YP_003017110 |
Protein GI | 253687920 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAG CAGGAATACG ATTCACATTG GCTGCGTTGA CGCTGGCGGT CGCCTCGGCG GCGTCGGCGA ATACTCTGGT ATATTGCTCA GAAGGATCGC CGGAAAACTT TAACCCACAG CTTTACACGT CTGGCACCAG CGTGGATGCC AGCGCGGTGC CGATTTATAA CCGTCTGGTG GATTTCAAAG TTGGCACCAC GGAGCTGATA CCGAGTCTGG CAGAGCGCTG GGATATCAGC GCCGATGGGC GCGTGTATAC CTTCCATTTG CGCAAAGGCG TTAAATTCCA GAGCAACAAA TATTTTAAAC CCTCGCGTGA TTTTACCGCT GACGATGTTA TTTTCTCCTT CATGCGGCAA AAAGATCCGC AGCACCCTTA TCACAACGTC TCGAAAGGCA CTTATGCCAA TTTTGAAAGT TTATCCTTTG GCTCGCTGAT TCAGAACATC GAGAAGGTGG ATGACCATAC GGTGCGCTTT ACGCTCTCCC ATGCGGAAGC CCCGTTTCTG GCTGATTTAG CCTGGTACTT TGCTTCCATT CTCTCTGCGG AATATGCCGA TGCGATGCTA AAAGCTGGCA CGCCGGAACG CGTGGACATG GACCCGATTG GCACTGGACC TTTCGAGTTA GCGCAGTATC AGAAAGATTC CCGTATCCTC TTTAAGGCAT TTCCTGCCTA TTGGGAAGGC AAGGCCAAGC TGGATCGGTT GATTTTCACT ATTACGCCGG ATGCCTCCGT GCGGTACGCC AAGCTGGAGA AGAATGAGTG TCAGGTGATG CCGTTCCCTA ATCCTGCCGA TCTACCGCGC ATGAAAGAGA ACAAAGATAT CGTGCTGATG CAGAAAGCGG GATTGAATAC CGGCTTCCTG TCGTTCAATA CCCAAAAAGC GCCGACGGAT AATGTGAAAG TGCGGCAGGC GTTAACGATG GCGATTAATA AGCCCGCGAT TATCGACGCC GTTTTTCAGG GAACCGGAAC GGCGGCGAAA AATCTGCTGC CGCCGGGTGT CTGGAGTGCT GACAGCGACC TGAAAGATTA TGACTACGAT CCTGAGAAGG CTAAGGCGTT GCTGAAAGAA GCGGGCTTGG CTGAGGGAAC CACGATCGAA CTGTGGGCGA TGCCGGTGCA ACGTCCGTAT AACCCTAATG CCCGCCGGAT GTCGGAGATG ATTCAGGCCG ACTGGGCGAA AGTCGGCGTG CAGGCCAAAA TTGTCACCTT CGAGTGGGGG GAATACCTAA AGCGGGTGAA AAGCGGTGAG CATCAGGCGG CGTTGATGGG TTGGACAACG GCGACGGGCG ATCCTGATAA CTTCTTCGGA CCGCTTTTTA CCTGCACGGC GGCCAACGGT GGTTCCAATT CGGCAAAATG GTGCTATCCG CCGTTTGATA AAATCATCAC CGAAGCGCGC GCTTCACAGG ATCATGAACA GCGAATAGCG TTATACAAGC AGGCACAGCA GATGATGCAC GATCAGGCAC CCGCCGTCAT GATTGCGCAT TCCACTCTCT CTATTCCGGT ACGCAAGGAA GTGATCGGTT ATGAAGTTGA CCCGTTTGAT AAGCATATTT TTTATCAGGT CGATGTGAAG AAGTAA
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Protein sequence | MKKAGIRFTL AALTLAVASA ASANTLVYCS EGSPENFNPQ LYTSGTSVDA SAVPIYNRLV DFKVGTTELI PSLAERWDIS ADGRVYTFHL RKGVKFQSNK YFKPSRDFTA DDVIFSFMRQ KDPQHPYHNV SKGTYANFES LSFGSLIQNI EKVDDHTVRF TLSHAEAPFL ADLAWYFASI LSAEYADAML KAGTPERVDM DPIGTGPFEL AQYQKDSRIL FKAFPAYWEG KAKLDRLIFT ITPDASVRYA KLEKNECQVM PFPNPADLPR MKENKDIVLM QKAGLNTGFL SFNTQKAPTD NVKVRQALTM AINKPAIIDA VFQGTGTAAK NLLPPGVWSA DSDLKDYDYD PEKAKALLKE AGLAEGTTIE LWAMPVQRPY NPNARRMSEM IQADWAKVGV QAKIVTFEWG EYLKRVKSGE HQAALMGWTT ATGDPDNFFG PLFTCTAANG GSNSAKWCYP PFDKIITEAR ASQDHEQRIA LYKQAQQMMH DQAPAVMIAH STLSIPVRKE VIGYEVDPFD KHIFYQVDVK K
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