| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1485 |
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| Symbol | |
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| ID | 8132426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1732425 |
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| End bp | 1733897 |
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| Gene Length | 1473 bp |
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| Protein Length | 490 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644864775 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_003017065 |
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| Protein GI | 253687875 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCAGACCG GATTCATCAA TAACTCACGC TGGCTGGATA AAACACGCGC AATCGTCATA
CTCGGTTCCA TGCTGCTCGC CGCATTTCTG GTGATCAGTT GGACCAGTTA TGAAGTGGCT
AAGGAATCAC TGGAAGAAGA AATCGAAGAA AATACCCTGC CGCTGACCAG TGACAACGTC
TATTCTGAAA TCCAGCAGGA TTTGTTAAAA CCTATCTTTA TTTCATCGCT GATGGCGCAC
GATACGTTTT TACGCGACTG GGTGCTAAAA AATGAAAGCG ATCCGCAGGC CCTATTCCGC
TATCTGAAAG AGATCGATCG CCGCTTCAAC ACCGTATTCT CTTTTTTCAT TTCAGATAAA
ACCAAGCTCT ACTACGATCA GCAGCGCATC CTGAAAACCG TCTCGGAATC CTCCCCCGAC
GATCAATGGT ATTTCCAGCA CAGAACGCTA TCGGATGATA TGCCTTATGT CGTCGATCTC
CGCGTCGATC CTGAAAACCG CACGCGGCTG GACATTTTCA TCAGCCATAA AGTCATGGAT
TATGAGGACA ATTTTATTGG CATTACCGGC GTGGGTATTC CGGTTGAGCG CGTTAAACAT
CTCATTGAAA AATACGAACA GCGTTATAAC CGTACAATCT ATTTCATTGA TAAAGAAGGC
AACATTACGC TACATGGGGA AAGCTACACC CGCCCCCTGC AAATTCAGCA ACAGCAGGGG
CTGAACCGGA TCGCGACCAC AGTTTTAACC TCCCCCGGTG GAGCCTATGA ATATCAGTCA
AACGGGGAAC ATATTTTCCT CAACACCCGG CTAATCCCTG AATTCGGCTG GTATTTGATG
GTGGAGCAAA CCAGCCATCC CAGCGAAAAA CGGCTATTCG CCACGCTGCT AAAAAATCTG
GGTATCAGCA CGTTCGTCAG CGTTCTCTTC CTGTTCCTGC TGTGGTTGAC CATTGGCGGC
TACCAGCGTC GTCTGGAACA GATGGCGACG ACCGATAAAC TAACGGGCCT CATGAACCGT
CAGGCATTTG ATTATCTATT CCGCCGTCTC GGTACGAAAA ATGCCCTACA GCACAAATCG
CTCTCTATCA TTCTTATCGA TATCGACCAC TTTAAAAAAA TCAATGACAA GTACGGCCAC
AACGTGGGAG ATATGGTTTT AAAAGAAGTT TCCTCCATCC TATCGGCGAA TACGCGCTCC
AGCGATCAAT CCTGCCGTTG GGGAGGAGAA GAGTTCGTCA TTTTGCTCGA CGATTGCGAC
ATCAACGCCG CGCAGCAACG TGCCGAAGCC TTGCGACACA ATATTGAGAT AACGCCTCTT
CCCTACCGTG AAGGGATCAT TCAGGTGACA GCCAGCTGCG GCGTTGCTGA ATATCGGGCA
GGTGAGACGC TCAGTATGCT GATCAACCGT GCCGATATCG CGCTTTATCA GGCAAAACAG
CAAGGGCGTA ATCAAGTGGT CAGCGCCATA TAG
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| Protein sequence | MQTGFINNSR WLDKTRAIVI LGSMLLAAFL VISWTSYEVA KESLEEEIEE NTLPLTSDNV
YSEIQQDLLK PIFISSLMAH DTFLRDWVLK NESDPQALFR YLKEIDRRFN TVFSFFISDK
TKLYYDQQRI LKTVSESSPD DQWYFQHRTL SDDMPYVVDL RVDPENRTRL DIFISHKVMD
YEDNFIGITG VGIPVERVKH LIEKYEQRYN RTIYFIDKEG NITLHGESYT RPLQIQQQQG
LNRIATTVLT SPGGAYEYQS NGEHIFLNTR LIPEFGWYLM VEQTSHPSEK RLFATLLKNL
GISTFVSVLF LFLLWLTIGG YQRRLEQMAT TDKLTGLMNR QAFDYLFRRL GTKNALQHKS
LSIILIDIDH FKKINDKYGH NVGDMVLKEV SSILSANTRS SDQSCRWGGE EFVILLDDCD
INAAQQRAEA LRHNIEITPL PYREGIIQVT ASCGVAEYRA GETLSMLINR ADIALYQAKQ
QGRNQVVSAI
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