| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1430 |
|---|
| Symbol | |
|---|
| ID | 8132369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1675149 |
|---|
| End bp | 1676942 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644864720 |
|---|
| Product | Thioredoxin domain protein |
|---|
| Protein accession | YP_003017012 |
|---|
| Protein GI | 253687822 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3118] Thioredoxin domain-containing protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.823534 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGACACC CTTCCGTCTA CCCGACCGGC ACGACGATTT ACAACCCGGA AAAGGCCTGG
GGCGGCTACA CCGTCTTTCA GGCGCTGGAG CGCGGCGCGG TGCTGGTGGA TATGAACGGC
ACCGAACTAC GCCTGTGGGA AGGCTTGCAC GGTTTTCCCA ACAAAATCCT GCCCGGCGGT
TACATCCTCG GGCATAGCGG TGAACGCGAT TCGCGCTACG GCATGCAGGA CATGGTCGAT
CTGATTCAGG TGGACTGGGA CGGCAACGTC GTCTGGAAAT TCAACGGCTA TGAACACATT
ACCGATCCTG ATCTCCCACC AGAATGGATG GCGCGCGTCC ATCATGATTA CCAGCGCAGC
GGTAATCCGG TCGGCTATTA CGCACCGGGA CAAGAGCCGC AGTCGATTGG CGGCAACACG
CTACTGCTGG CGCATACCAA TCTGCATAAC GAACGGATCA GCGACAAACT GCTGCTCGAC
GACACCATTA TTGAGGTGGA CTGGGAAGGT AACATCTTAT GGGAATGGCG TTGCAGCGAT
CATTTTGACG AGTTGGGCTT TGACGACGAT GCGAAAACCG CGCTGTACAA CAATCCTAAC
CTGCGCAAAA GTGGCGGCGG CATGGGCGAC TGGATGCACA TCAACTCCAT GTCGGTACTC
GGCCCCAACC CGTGGTTCGA GCAAGGCGAT ATCCGTTTCC ACCCGGATAA CATTATCTGG
GACGCCCGCG AATCCAACAT CATCGCCATC ATCGACAAAC AGAGTGGCAA TATCGTCTGG
CAGCTTGGTC CTAATTACAA CACGCCTGAA CTCAAACACA TTGGCTGGAT TATCGGCCAG
CATCACGCGC ATATGATCCC CGCGGGCTTG CCGGGGGCGG GCAATATTCT GGTGTTTGAT
AACGGTGGTT GGGCAGGCTA CGGCGCACCC AATCCGGCCT CGGCCGACGG CGTGAAAAAC
GCCTGGCGTG ACTATTCGCG CGTGCTGGAA ATCAACCCGG TGACGCTGGA TATTGTCTGG
CGCTATTCGC CCTACGAAGC AGGCATTCCA CATCCGACCG ACGCTTTCCG TTTTTACAGC
CCGTACATCA GTAATATCCA GCGTCTGCCG AACGGCAATA CGCTGATTAA CGAAGGCGCC
AATGGTCGAC TCTTTGAAGT CACCGTCGAT CACGAGATTG TCTGGGAGTT TATTTCCCCG
TATTGGGGCA AGACGGGGAA TACCAACATG CTGTATCGCG CTTACCGTGT GCCCTACGAG
TGGGTGCCAC AGCTGCCGCG TCCACAGGAA ACGCCAGTGA TCGCCCCCGA CAACACTCGG
CTACGTCAAC CGGGAGCCGC CGTCCCCGGC TTCGCCAGCG TCATTCGTAT TGAGGGCGCT
CGCCCCTACA AAAAGAGCGG CGATGCCCTG TGCGTCGCAA CCGATAGCGA AGACCTCAAG
CGCAGTCCGA AGCTTTTTGC CGTCAACCGA GAGCGCTTTG CTTCACTGAC CGCTGACGAT
TGGCCTGGAC TGGCAGCCCA ACAAGGCCCA CAGTTGCTGC TGGTCGGCGC GGAGCGCTGT
GTCCACTGCA AAAGCCTCTA CCGCCAGTTG GAAACGATTC TGGATAACGA GGAATACCGC
CACTTACCGA GTCATTATCT GGACGCCGAT CGTCACACTG CGCTGTCGGA GAAACTGGCG
ATCAGAACGT TACCGACCCT GCTATGGATC GAAAATGGTG GAGAACGGGA TCGCTTGAGC
GGCGCACAGC AACCCGAACG CCTACGCCAG TGGCTGGCCG AACAGCAACG CTAA
|
|---|
| Protein sequence | MGHPSVYPTG TTIYNPEKAW GGYTVFQALE RGAVLVDMNG TELRLWEGLH GFPNKILPGG
YILGHSGERD SRYGMQDMVD LIQVDWDGNV VWKFNGYEHI TDPDLPPEWM ARVHHDYQRS
GNPVGYYAPG QEPQSIGGNT LLLAHTNLHN ERISDKLLLD DTIIEVDWEG NILWEWRCSD
HFDELGFDDD AKTALYNNPN LRKSGGGMGD WMHINSMSVL GPNPWFEQGD IRFHPDNIIW
DARESNIIAI IDKQSGNIVW QLGPNYNTPE LKHIGWIIGQ HHAHMIPAGL PGAGNILVFD
NGGWAGYGAP NPASADGVKN AWRDYSRVLE INPVTLDIVW RYSPYEAGIP HPTDAFRFYS
PYISNIQRLP NGNTLINEGA NGRLFEVTVD HEIVWEFISP YWGKTGNTNM LYRAYRVPYE
WVPQLPRPQE TPVIAPDNTR LRQPGAAVPG FASVIRIEGA RPYKKSGDAL CVATDSEDLK
RSPKLFAVNR ERFASLTADD WPGLAAQQGP QLLLVGAERC VHCKSLYRQL ETILDNEEYR
HLPSHYLDAD RHTALSEKLA IRTLPTLLWI ENGGERDRLS GAQQPERLRQ WLAEQQR
|
|---|
| |