| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1420 |
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| Symbol | |
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| ID | 8132359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 1662548 |
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| End bp | 1664050 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644864710 |
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| Product | proline/glycine betaine transporter |
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| Protein accession | YP_003017002 |
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| Protein GI | 253687812 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00160587 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGATTAA AAAAGAAAAA AATTGAGCCG ATGAAAATTC AGGACATTAC CATTATTGAT
AATGCCAGAC TCAAAAAAGC CATTACCGCA GCCGCATTGG GTAATGCGAT GGAATGGTTT
GATTTTGGAG TATATGGTTT TGTGGCGTAT GCGCTTGGAC AGGTTTTTTT CCCCGGTGCC
GACCCCGGCG TACAAATGAT TGCCGCACTG GCAACATTCT CGGTTCCCTT TTTAGTTCGG
CCGCTCGGCG GAATATTCTT TGGTGCGATG GGCGATAAAT TTGGTCGCCA GAAAGTTTTG
TCGATCACCA TTATTATCAT GTCGGTGAGC ACATTCTGTA TTGGCTTGAT TCCGTCTTAT
GAATCGATCG GTATTTGGGC GCCGATACTA CTGCTGTTGG CGAAACTGGC GCAGGGCTTC
TCCGTTGGGG GCGAATATAC CGGCGCGGCG ATTTTCGTTG CCGAATATTC CCCGGATAGA
CGACGCGGAT TTTTAGGAAG CTGGCTGGAT TTCGGCTCGA TTGCCGGATT CGTGATGGGG
GCGGGTGTCG TGGTGCTTAT TTCCTCCATT GTCGGAGAGG AAAGCTTTCT GGAATGGGGA
TGGCGTATTC CGTTCTTTAT TGCTGCACCG CTCGGATTAA TTGGGATTTA TTTGCGCCAT
GCGCTGGAAG AAACGCCGAC GTTCCAGCAG CACGTGGACA ATATTGATAA AGAATCAAAA
GACAGCATTC AATCCCCGCC GAAGATTTCT CTGCGTGAAA TTGTTAGCAA GCAATGGAAA
GGTCTGCTGA TCTGTATTGG GATGGTGATT ACCACCAACG TGACCTATTA CATGCTGCTG
ACCTATATGC CGAGCTACCT TTCACACAGC CTGAATTACT CGGAAGATCA TGGCGTGATG
ATTATTATTG CCGTCATGAT CGGGATGCTG TTTGTGCAGC CGGTGATGGG GTTGATGAGT
GATCGCTATG GGCGTAAACC ATTTATTATT TGCGGCAGTA TTGGGTTGCT GCTGCTGTCA
GTACCCAGCT TCATCTTGAT CAACAGCGAT GTGATCGGGC TGATTTTTTG CGGATTACTG
ATGCTGGCTG TCCTGCTGAA TTCGTTTACG GGGGTGATGG CTTCGACGCT TCCCGCACTG
TTCCCGACGC ATATTCGTTA TAGCGCGCTG GCGACCTCAT TTAACGTTTC TGTACTGGTT
GCGGGCTTTA CGCCGACGGC GGCGGCGTGG CTGGTGGAGT CGACCAGCAA CCTGTATATG
CCAGCGTATT ACCTGATGGT GATTGGGCTT ATCGGTTTGA TTACCGGGAT GTCGATGCGA
GAAACGGCAA ACCAGCCGCT GAAAGGCGCA ACGCCAGCGG CGTCGGATCG GACGGAAGCC
AAAGAGCTGT TGCAGGAACA GTACGACAAT ATTGAGCTGA AAATAGAAGA GATTGATGAG
CAAATTGCCG AGCTGGAGAA GAAAAGAAAA CGGCTGACCG AACAGCATCC TGAGATTAAT
TAA
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| Protein sequence | MRLKKKKIEP MKIQDITIID NARLKKAITA AALGNAMEWF DFGVYGFVAY ALGQVFFPGA
DPGVQMIAAL ATFSVPFLVR PLGGIFFGAM GDKFGRQKVL SITIIIMSVS TFCIGLIPSY
ESIGIWAPIL LLLAKLAQGF SVGGEYTGAA IFVAEYSPDR RRGFLGSWLD FGSIAGFVMG
AGVVVLISSI VGEESFLEWG WRIPFFIAAP LGLIGIYLRH ALEETPTFQQ HVDNIDKESK
DSIQSPPKIS LREIVSKQWK GLLICIGMVI TTNVTYYMLL TYMPSYLSHS LNYSEDHGVM
IIIAVMIGML FVQPVMGLMS DRYGRKPFII CGSIGLLLLS VPSFILINSD VIGLIFCGLL
MLAVLLNSFT GVMASTLPAL FPTHIRYSAL ATSFNVSVLV AGFTPTAAAW LVESTSNLYM
PAYYLMVIGL IGLITGMSMR ETANQPLKGA TPAASDRTEA KELLQEQYDN IELKIEEIDE
QIAELEKKRK RLTEQHPEIN
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