Gene PC1_1419 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1419 
Symbol 
ID8132358 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp1661280 
End bp1662272 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content56% 
IMG OID644864709 
Producttranscriptional regulator, AraC family 
Protein accessionYP_003017001 
Protein GI253687811 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.00505932 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCATTG TTATGCGAGA CGGCGTTTTT CATATGCGAA ACGTTGGGGG AAAAATGACA 
CAAAGACAGC AACGGGTGCG AGAGGGGTTA TCGTCCGGCG ATCGGTGTCG GATGAGTGAA 
GTGAATCGCG CTGATTCACG TCGCATCCTG CCGGGCGATA TCGGTGAATG CTGGTCGGAT 
TTCAGCCGCA TTGATGCGGA TCTGTCATTG GCGCATTCAC AATACCGCCC ACACCGTGCG 
TTGGTGGAAG AAACACAGAA TCCACATGCG CAACCGATGT TGGTTATGAC GTTTGCGCTG 
GCAGGGGAGT CGGCTTATTA CGATAACGGC GGTTCACAGG TCTGGTTTCG CCAACGGCAT 
GTCACGATTA CGACGTTTGG CGCCAGCGTA GGCGAACGTC ATTATCAGGC TCAGCAGCAG 
GTCGATCAGC TACGGCTGTT GGTGGGGAAA ACGGCGGCGG CTCGTTATTT TGGCGTGGAG 
TGTGCGGAAC GGCTGTTCAG GGGCGATGGG GTACAACAGC GTGCGTTTGC CCCCGTCTCT 
GCGGCCAGTC AGGTCCATGT CAATGCGCTG TGCGCTGACG CCGATCCGCT AAACCGTCAC 
ATCCATGCTT TAAGCCTGCT GGCGCAGTAT CGTCACGTCC TGCAGCCGGA AGAGAGGCGC 
GGCGCTATTC ATCTACAAGA ACGGCAGCAG TTGGAGCAGG TGTGCCGCTG GATGCGTGAA 
CATCTGGCTG AACCGCTGAC GCTGGCTTGT ATCGCGACTC AGGCAGGAAT GAGTGAATCC 
AGACTCAAAC TCGGGTTTCA TCGCTGCTTC GCGACTACGC CGGGTCAGAT GCTATTGCGG 
ATGCGGATGG AACGGGCGCA TCAACTGCTG GAACAGGGAT TTCAGGTGGC GCAGACTGCC 
TGGCAAGTTG GCTATCGGCA TCCCGCTAAT TTCAGTCTGG CATTTACGCG CTATTTTAGC 
CGTAACCCAA AAATGATTAC GCCGCGTAAG TAA
 
Protein sequence
MFIVMRDGVF HMRNVGGKMT QRQQRVREGL SSGDRCRMSE VNRADSRRIL PGDIGECWSD 
FSRIDADLSL AHSQYRPHRA LVEETQNPHA QPMLVMTFAL AGESAYYDNG GSQVWFRQRH 
VTITTFGASV GERHYQAQQQ VDQLRLLVGK TAAARYFGVE CAERLFRGDG VQQRAFAPVS 
AASQVHVNAL CADADPLNRH IHALSLLAQY RHVLQPEERR GAIHLQERQQ LEQVCRWMRE 
HLAEPLTLAC IATQAGMSES RLKLGFHRCF ATTPGQMLLR MRMERAHQLL EQGFQVAQTA 
WQVGYRHPAN FSLAFTRYFS RNPKMITPRK