Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1411 |
Symbol | |
ID | 8132350 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1649396 |
End bp | 1652074 |
Gene Length | 2679 bp |
Protein Length | 892 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644864701 |
Product | TonB-dependent heme/hemoglobin receptor family protein |
Protein accession | YP_003016993 |
Protein GI | 253687803 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01785] TonB-dependent heme/hemoglobin receptor family protein [TIGR01786] TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTAAAA GAACACAACA GCAAAACAGC CGATTGTTAC AACTTAATCC ACTTTCTCTT GCCGTCGGCA TCGCACTGTC GCTGCCTGCT TCATTCCACT ATGCGCAAGC AGAAACACCG GCAGCCAACG TTCAGGAGGC GGCTCGCCAT AGCGTCACCT TCTCCATCAG CCCGCAGCCG TTAAGCAGCG CGCTGCTGCG TTTCGCTGAA CAGGCGGGGT TACAGGTCTT TTTTGCCGAC GTCAAACTGG AAAATATGCA GGCCACTTCC CTCCAGGGGC GTTTCACGCC AGAGCAGGGG CTACGCAGGA TGATCGGCAC TAACCCAGTC GATTTCCAGA TCGGTAGCAA CGGCGTCATT ACCTTGCGCC CTCGTTCAAC CAACGTCGAT ACGGCCAAAA TAGACGATGT GATGACGGTA CGTGCCTTTA CCGTCGCCAA TCCCGGTGAC TGGATCTACG AACAGCCCCG TGCCATCAGC GTTATTTCAC GCGAGCAGAT GGATAACCGC CCTTCCCGCC ATGCCGCCGA TCTGCTGGAA CAATCCGCTG GCGTTTACTC CAGCGTCAGC CAGCAGGATC CTTCGCTGTC GGTGAACATT CGCGGCATAC AGGATTTCGG CCGCGTGAAT ATGAACATCG ACGGCGTGCG GCAGAATTTT CAAAAAACCG GCTACGGGCA GCGTAACGGT CAGATGTATA TCGATTCGGA GCTGCTCTCC GGCGCAACCA TTGAAAAAGG CGCGACAAAC GTGATGGGCA GCGCAGGTAC GCTGGGCGGT GTCGCCACGT TTAACACCGT TAGCGCCCAC GATTTTCTGG CGCCGGGTAA AGAACTGGGC GGAAAATTGC ACGCCAGCAC AGGCGACAAC GGCACGCATT TTATCGGCAG CGGCGTGCTC GCACTGGGTA ACGAAAGCGG CGACATTCTG GTCGGTGCCA GCGAGCGTCA TCTGGGCGAC TACTGGCCGG GGAATGATGG CAACCTCGGT AATATTCGTA TTCCCGGAAA TTCAACTAAT TACGAAGAGT GGGCGAATAA CTTAAAGCAT CAGAAAGTGA CCAGCGCGGC CTACACCATG CGCTCACGGC TGGCGAAAGT CGGCTGGAAT CTGCCTGCCA ATCAGCGCTT CCAGCTCAGC TATATGCAAA CGCAAACCTC TTCTGAAAAC GCAGGGACGT TATCCAATCT TTCCAATACC GAACTGGGTT GGAAAGCCAG CGGACACAGC GAGATTATGG CACGCAGTAC CGCGCTGGAT TACAGCCTGA AGCCGGACGA TCAGCGCTGG CTGGATTTTA AGGCCAAGAT TTATTACGCC GATACCAATA ACGACACCGA TAACTATGCG CTCTCTAATA CCAGTGCCTA TCATGAAAGC ACGCGGCTAC GCACGTACGG CGCCCAAGCG CAGAATACCT CGACGCTGTG GCAGCAGGGC GCGCACGATC TGAAAACTGA CTACGGGCTG GATTTCTATT ACGACAAGAT CACGACGGAC AGCACCAATA GCACGGCCAG TAACGCCACC CCGGAAGGGA ACCGCGCGAT GGCCAGCCTG TTCGCGAACC TGAATTACGC CTACGACGAA TGGGTAACGC TGCAAGGCGG CCTGCGTTAC GATCGCTACC GATTACGCGG CACCACCAGC ATCAGCTATC GGGAAATTCC CTATACCATC ACGAATCCCT GCACCGCACG GTCGATCGCG CTCTGCCCAC CGTTCGTGAC CACCACGCAG GATTGGAATG TCGATGACGA ACACGGCAAA CTTTCCCCCA CCCTGTTTGC TGGCGTCCGC CCCGGCGTTG AATGGCTACA GCTGTTCACC AGCTATGGCC TGTCCTGGCG TCCGCCGTCA GTCAGCGAAA CCTTTGCCAA CGGCACCTAC AGCGCAGGCA ACTATTACCT CTATCCAAAC CCCAACCTTA AGCCGGAACG CTCTCGCGCC TGGGAAGTCG GATTCAATAT TCAGCAGCCT AATCTGCTCG TTGATGGCGA CAGGCTGGTC AGCAAAGTGT CCTATTTCGA CACCCGGATC AACAACTACA TCAGCCTGAA CGGCGCGCGC AATAAGCCGG GCTATAACGG CTATTCCCTC AGCAATTCCG TGTTCCAGAA CAATCTGGCG AAGAGTCGCT TCCGCGGCAT GGAATACCAG CTGAATTACG ACGCGGGCTT TTTATATGTC GATGCCACCT ACACCCACAT GATCGGCAAT AACGATTTCT GTGCGCCGGT GGCCTGGATG GGCGGCGTCA CGACCGTCGG CGGTTCCAGA GGCAACTACT ACTCTACGCC TGTCGATACT ACGGCTAGCG ATTTCTCTTG CCAGAAAACG CTGTTATTCA GCAACGCGGC CTATCTGCCG GGCGACCGCG GTTCCGTCAC GCTGGGGACA CGCGTCTTCG ATCGCAAACT GGATATGGGC GTCACGATGC GCTTCGCTCC CGGCTATCAG GACGCTGCCG CACCGGCCAA CTCCGCCTAT TTAGCCGACT GGCCCAAATA TGAAGTTTAC GATCTGTACG CCAGCTATCG TCTGACCGAC AGCCTGACGG TACGCGGTTC CGTCGAAAAT ATCGCTAACC GTACTTACAT CGTGAGCTAT GGCGAATCAT TGGGTTACAC ACCAAGCCGG GGCAGAACGG TGCAGGCTGG CGTGGAGTAC CGATTCTAA
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Protein sequence | MFKRTQQQNS RLLQLNPLSL AVGIALSLPA SFHYAQAETP AANVQEAARH SVTFSISPQP LSSALLRFAE QAGLQVFFAD VKLENMQATS LQGRFTPEQG LRRMIGTNPV DFQIGSNGVI TLRPRSTNVD TAKIDDVMTV RAFTVANPGD WIYEQPRAIS VISREQMDNR PSRHAADLLE QSAGVYSSVS QQDPSLSVNI RGIQDFGRVN MNIDGVRQNF QKTGYGQRNG QMYIDSELLS GATIEKGATN VMGSAGTLGG VATFNTVSAH DFLAPGKELG GKLHASTGDN GTHFIGSGVL ALGNESGDIL VGASERHLGD YWPGNDGNLG NIRIPGNSTN YEEWANNLKH QKVTSAAYTM RSRLAKVGWN LPANQRFQLS YMQTQTSSEN AGTLSNLSNT ELGWKASGHS EIMARSTALD YSLKPDDQRW LDFKAKIYYA DTNNDTDNYA LSNTSAYHES TRLRTYGAQA QNTSTLWQQG AHDLKTDYGL DFYYDKITTD STNSTASNAT PEGNRAMASL FANLNYAYDE WVTLQGGLRY DRYRLRGTTS ISYREIPYTI TNPCTARSIA LCPPFVTTTQ DWNVDDEHGK LSPTLFAGVR PGVEWLQLFT SYGLSWRPPS VSETFANGTY SAGNYYLYPN PNLKPERSRA WEVGFNIQQP NLLVDGDRLV SKVSYFDTRI NNYISLNGAR NKPGYNGYSL SNSVFQNNLA KSRFRGMEYQ LNYDAGFLYV DATYTHMIGN NDFCAPVAWM GGVTTVGGSR GNYYSTPVDT TASDFSCQKT LLFSNAAYLP GDRGSVTLGT RVFDRKLDMG VTMRFAPGYQ DAAAPANSAY LADWPKYEVY DLYASYRLTD SLTVRGSVEN IANRTYIVSY GESLGYTPSR GRTVQAGVEY RF
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