| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1409 |
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| Symbol | |
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| ID | 8132348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1646544 |
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| End bp | 1648403 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644864699 |
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| Product | type I secretion system ATPase |
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| Protein accession | YP_003016991 |
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| Protein GI | 253687801 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCGCAT CCCATCCGAC TTCATCAGGC CGGGAGATTA TTGACGCGCT GGCCGCCTAC
CGTCAGGGGT TCTGGGGAAT TGGCCTGTTC AGTGCTGTTA TCAATCTGCT GATGCTGGCA
CCGGCGATTT ATATGCTCCA GGTTTATGAC CGCGTATTGC CTTCCAGCAG CACCATGACG
CTGGCGATGC TGACGATCAT TATGTTAGGG CTATTTTTAT TGATGGGATT ACTGGAATGG
ATACGCAGCG CCGTGGTGAT TCGCCTCGGT ACGCAGATGG ATATGCGACT GAATCAGCGT
ATCTACAATG CGGCGTTTGA AAGCAATCTC AGGAACGGCA CGGCGAGCGC CGGCCAAGCC
TTAAACGATC TGACTGCCCT GCGCCAGTTC GCCACCGGGA ATGCGCTATT TGCCTTCTTT
GATGCGCCGT GGTTTCCGGT TTATCTGCTG GTGATTTTCT TACTTCATCC CTGGCTGGGC
GTTATGGCGC TGGCGGGGGC AATCATACTG ATTGTGCTGG CCTGGCTAAA TCAAAAACTC
ACGCGCGAAC CTTTGGCCTT AGCCGCACAA AACACCGTTC AGGCGACGCA GCAGGCCAAC
GCCAATCTGC GCAACGCCGA TGCCATTGAA GCCATGGGGA TGCTGCCCGC CATGCGCGAA
CGCTGGCTGA CGCAGCACCA AGCGTTTCTC TATTATCAGA ACGTTGCCAG CGAAAAAAGC
GCCAACATTA CCTCGCTGAC GAAGAGCACC CGACTGGCGC TCCAGTCGCT GATGCTGGGT
TTAGGTGCGC TGCTGGCCGT CAACGGCGAT ATCACCCCCG GAATGATGAT TGCCGGATCC
ATTCTGGTCA GCCGCGTCCT CAGTCCGATC GATCAGATCA TTGGCGTCTG GAAACAGTGG
ATGCAGGCGC GCCTCGCCTG GCAGCGTATC AATCTCCTGC TCGATACTCA TCCGGCACGC
ACCGCTGGCA TGGCGCTGCC CGCTCCGGAA GGCAAACTTC AGGTGGAGCA GCTCAGCGCC
AACGCACCTA ATACCCGCAC TCCCATACTC GCCAATATCA CGTTTGACCT GGCTCCCGGC
GATGTGCTCG GCGTGTTAGG CCCTTCTGGC TCGGGTAAAT CCACCCTCGC CCGCCTGCTG
GTTGCCGCCA TGCCCGCTCT CGGTGGCAAA GTCAGACTGG ACGGCGCAGA CATGCACCAG
TGGGACAAAA GCGATTTAGG CCGCTTCGTC GGTTATCTGC CACAGGATGT GCAGCTTTTC
AGCGGGACGA TTGCCGAAAA CATTGCTCGT TTCACCCAGC CGGATGCAGA AAAGATCGTT
GCCGCCGCCG TCACGGCAGG CGTTCACGAG ATGATTCTTC GGCTGCCGCA GGGCTACGAT
ACGCAGTTGG GTGAAGGCGG TGCCGGGCTA TCCGGCGGTC AGAAGCAGCG TGTCGCCCTT
GCCAGAACCA TCTACAACCA GCCGCGCCTG ATTGTGATGG ATGAACCCAA TGCCAGCCTC
GATGACGACG GCGAGAAAGC CTTATTGGCC GCGATTGCCG CCCAGCAGGA AGCCAAGAGC
ACGCAGGTAC TGATCACACA CAAACCCGCC CTGCTGTCCT GCGCCAATAA GCTGTTAGTC
CTGCGCACCG GACAGATTCA GTATTTCGGC GCAACAGAGC AGGTGCTGAA AGAGCTACAG
CGTGCCAAGC CCGCCACTAC TTCTACGACC AAACCGATGA CGAAACCCGC CAGCGCCAAA
CCTGTACCGG CTAAAACAGC CGACGCCGCC AATGCCTTTA CTCCAAAAGA GCCCGGTTCC
GCCGGGCTGA GCATGGTGTA CAGCGCGCCA ACGCCACGCC GTGCCGCACC GGATAAATGA
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| Protein sequence | MPASHPTSSG REIIDALAAY RQGFWGIGLF SAVINLLMLA PAIYMLQVYD RVLPSSSTMT
LAMLTIIMLG LFLLMGLLEW IRSAVVIRLG TQMDMRLNQR IYNAAFESNL RNGTASAGQA
LNDLTALRQF ATGNALFAFF DAPWFPVYLL VIFLLHPWLG VMALAGAIIL IVLAWLNQKL
TREPLALAAQ NTVQATQQAN ANLRNADAIE AMGMLPAMRE RWLTQHQAFL YYQNVASEKS
ANITSLTKST RLALQSLMLG LGALLAVNGD ITPGMMIAGS ILVSRVLSPI DQIIGVWKQW
MQARLAWQRI NLLLDTHPAR TAGMALPAPE GKLQVEQLSA NAPNTRTPIL ANITFDLAPG
DVLGVLGPSG SGKSTLARLL VAAMPALGGK VRLDGADMHQ WDKSDLGRFV GYLPQDVQLF
SGTIAENIAR FTQPDAEKIV AAAVTAGVHE MILRLPQGYD TQLGEGGAGL SGGQKQRVAL
ARTIYNQPRL IVMDEPNASL DDDGEKALLA AIAAQQEAKS TQVLITHKPA LLSCANKLLV
LRTGQIQYFG ATEQVLKELQ RAKPATTSTT KPMTKPASAK PVPAKTADAA NAFTPKEPGS
AGLSMVYSAP TPRRAAPDK
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