| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1408 |
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| Symbol | |
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| ID | 8132347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1645121 |
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| End bp | 1646479 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644864698 |
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| Product | type I secretion membrane fusion protein, HlyD family |
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| Protein accession | YP_003016990 |
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| Protein GI | 253687800 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCGT TACGTGAAGT CACATCACAG CCAACAGCCC CACGTACTCA AGTAGAGGAT
AACGTTGCGG CAATGCCGTT ACATACCGAT GCCGGACGCT ATTTAAAGCA TGGCCTCTGG
CTGGTGCTTA TCGGCTTTGG TGGCTTGCTG CTGTGGGCTG GCATGGCACC GCTGGATAAA
GGCGTCGCCG TATCCGGTCG GGTCATTGTC GCGGACAATC GTAAAGCCGT ACAGCCTGTC
AGTAGCGGAC GTATCGCTTC ACTCACCGTG CGGGATGGCG ACCGCGTGCA GGCCGGGCAA
GTTCTTGCCA CGCTGGATCA AACGCCCGCT CAGGCACAAC GTGACAATCT CGTCACCCAG
CTTCAGGAAG CGCACGCGGG CGAAGCGCGT CTGCTGGCAG AACGCGACGA TCTGAGTACG
ATTGCTTTCC CAGCCCCCAC AGAGCAGCAC AGCACCGTCA CACAGCAAAT TCAGATCGCC
CAGCAGCAGC TTTTCATCAG CCGTCGCGCC GCGCTGCAAC AGGAACGTAC GGCAATGCAG
GCTGCCATCA TCGGGGCAAA AGCGCAGTCG CAGGGGTCAC AGGCGCTGCT GGCCAGCAGC
CAAACGCAAT TCCAGATTAT CAGCGAACAG CTGCGCGGGC TACGTCCGCT GGCGCAGGAA
GGCTATATCG CCCGTAACCG CCTGCTGGAT GTCGAGCGAC AGGCCGCCCA ACTGGCTGGC
GCGATTGCGC AGGAACGAAA TAATCAGGTA CAGCTCCAGC AGCAGGTCGT CGAGCTGGAG
CAAAAAATTC AGCAGCGTCA GAACGAATAC CAGAAAGAGG TACGCGCCCA ACTCGCCGAT
ACCCAGCGTT CCATTCAGGA TCTCACCCAG CGCCTAAAAA CAGCGGAATA TGAACTCCAG
CACACGCACA TTCGCGCGCC CGCCAGCGGC ACCGTCGTCG GGCTAGCGCT GCATACCGAA
GGCGGCGTAG TCAATAGCGG ACAGATGCTG ATGGAAATTG TTCCCGATGG GCAACCGCTC
TTGATTGACG CGCAGTTGCC TATCGAGCTG GTAGACAGAG TCAGCAACGG GCTACCGGTC
GAGCTGCTGT TTTCTGCGTT CAACCAAAGC ACTACTCCGC GCATTTCCGG TGTTGTCGCA
CTGATCGGTG CCGACCAACT CGTCGAACAA CAGACCGGAA AACCCTATTA CGCACTGCGT
ATTCACGTCG ATGAACAGGG TAAACAGCAG CTCGCCGGAC TGGACGTTCG CCCCGGTATG
CCGGTGCAAG CCTTTATTCG CACCGGTGAG CGCTCCCTGC TCAACTACCT GTTTAAACCG
CTTTCCGATC GCCTGCATCT GGCACTGACC GAGGAGTAA
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| Protein sequence | MSALREVTSQ PTAPRTQVED NVAAMPLHTD AGRYLKHGLW LVLIGFGGLL LWAGMAPLDK
GVAVSGRVIV ADNRKAVQPV SSGRIASLTV RDGDRVQAGQ VLATLDQTPA QAQRDNLVTQ
LQEAHAGEAR LLAERDDLST IAFPAPTEQH STVTQQIQIA QQQLFISRRA ALQQERTAMQ
AAIIGAKAQS QGSQALLASS QTQFQIISEQ LRGLRPLAQE GYIARNRLLD VERQAAQLAG
AIAQERNNQV QLQQQVVELE QKIQQRQNEY QKEVRAQLAD TQRSIQDLTQ RLKTAEYELQ
HTHIRAPASG TVVGLALHTE GGVVNSGQML MEIVPDGQPL LIDAQLPIEL VDRVSNGLPV
ELLFSAFNQS TTPRISGVVA LIGADQLVEQ QTGKPYYALR IHVDEQGKQQ LAGLDVRPGM
PVQAFIRTGE RSLLNYLFKP LSDRLHLALT EE
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