| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1407 |
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| Symbol | |
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| ID | 8132346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1643763 |
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| End bp | 1645118 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644864697 |
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| Product | type I secretion outer membrane protein, TolC family |
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| Protein accession | YP_003016989 |
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| Protein GI | 253687799 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGCGCC TTTCATCCGT TTATCGCGCG GCAATCCGCT CCCGCTATGC CATCCCACTT
GTTCTCACGC TGTTCTACAG CGCACCGACT CAGGCACTGG GATTAATGGA AGCCTGGCAG
CATGCGCTAA CCCACGACCC GGCTTTTCAG GCTGCCGTGC ATGCGCGTAA TGCCGACAGC
GAAGAAAAGA ACATCGGGCG CGCCGGACTC TTGCCGAAAG TCACCTATGA CTACAGCCAG
TCACGTAACG ATTCCACCGT TACAACGGGT GGCCAACAGT CGGAACGGGA TTACACCAGC
CGCGTCTCCA GCTTTTCCCT GCAACAGCCG CTTATCGACT ACGCGGCATG GTCGCGTTAT
CAACAGGGTG AAGCCAGCGC CGTGCTGGCC GACGAACAGT TGCGCGATGC CAGCCAGCAG
TTGCTGGTAC GTCTGTTTCA GGCCTACACC AACGTGCTGT TTAGCCGTGA ACAGATTGCG
CTGGTTCAGG CTCAGCAGCG CGCCTATCGC GAGCAATACC AACTGAATCA ACGCCTCTTT
CAGCAAGGCG AAGGCACCCG CACGGATATG CTGGAAACCG AAGCACGGGT CAACCTGACG
GAAGCGCAGC TCATCGAAGC GCGGGACAAT CTGGATATCA GCCTGCGTGA ACTGGAGACT
CTGCTAGGGA TGCCCGTTGG TGTGGATCAG CTTGCGACGC TAACGCCACG CTTCATGCCG
CAACCGCTTC AGCCTGCGGG CTACCAGCAT TGGCAATCAT TGGCGGTGCG CCACAACGCT
CAGCTATTAG CGCTAAACCA GTCGCTGGCC GTGGCGAAAT ACAGCATTGA GCGTAACCGG
GCGGGTCACC TGCCGCAGGT CACACTGGTC GCCAGCACGC GCAATACGCA ATCAGACACC
GAAAACAGCT ACAACCAGAA ATACGATACG CGATCGATTG GTATCCGCGT CAGCGTACCG
ATTTTTGCCG GTGGTGGTGT CTCTGCCGCA ACGCGTCAGG CGCAGGAGCG CTATCAGCAA
ACGGCGCGGG AAAAGGACGA ACAGACGGCG ACAATACAGA CGGAACTGCG TCGCCAGTTT
AATCTGGTCA CCAGCAGTCA GGCGAAAATC CGTGCTTATG AGCTGGCGGA AAAATCAGCG
CTGGCACTGG TTACCGCCAC ACAGAAGAGC GTTCAAGGTG GAGAGCGCGT GAATCTTGAC
GTACTGAATG CTGAACAGCA GCTCTACGGT GCACGGCGCG ATCTGACCGA AGCACGCTAT
ACCTGGCTGA CGGCCTGGCT ACAGCTGCGT TACTACGCCG GTACACTGGA CGAGCAGACG
TTGCGTCAGT TAGCGACCTA TTTCGTACAT ACCTAA
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| Protein sequence | MLRLSSVYRA AIRSRYAIPL VLTLFYSAPT QALGLMEAWQ HALTHDPAFQ AAVHARNADS
EEKNIGRAGL LPKVTYDYSQ SRNDSTVTTG GQQSERDYTS RVSSFSLQQP LIDYAAWSRY
QQGEASAVLA DEQLRDASQQ LLVRLFQAYT NVLFSREQIA LVQAQQRAYR EQYQLNQRLF
QQGEGTRTDM LETEARVNLT EAQLIEARDN LDISLRELET LLGMPVGVDQ LATLTPRFMP
QPLQPAGYQH WQSLAVRHNA QLLALNQSLA VAKYSIERNR AGHLPQVTLV ASTRNTQSDT
ENSYNQKYDT RSIGIRVSVP IFAGGGVSAA TRQAQERYQQ TAREKDEQTA TIQTELRRQF
NLVTSSQAKI RAYELAEKSA LALVTATQKS VQGGERVNLD VLNAEQQLYG ARRDLTEARY
TWLTAWLQLR YYAGTLDEQT LRQLATYFVH T
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