| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1375 |
|---|
| Symbol | |
|---|
| ID | 8132314 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 1602549 |
|---|
| End bp | 1603754 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644864665 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_003016957 |
|---|
| Protein GI | 253687767 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.140784 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCAG AAATAGATAA ACGACAGAGA AAACTATGGC TCGGCCTATT ATTGATGTTA
GGGGCGCTTG GTATTGTTAT TGTGGTTTGG GGAGAAGGTC TATTTTTCAG CCAGACCGAA
TTTGCGAATC GCCATAGCGT TGAGGTTACC TACGCCGATA TTGACGATGT GGTGACGGCA
GCAGGGCAGG TAAGCCCGAT GCAATATGTT GATGTTGGGG TTCAGGTTTC TGGACAGATT
CAGCATATTG CTGTGGCGGT GGGATCGATC GTCAAAAAGG GGCAGCTCGT CGCGCAGATT
GATCCGGAAT TACAAATCGC GACGGTTGAG GCGAATCGTG CATTACTTGA TAGCCAGCAG
GCAGCTATTC GCCAGCAGGC GGCGCAGTTG ACATTAGCGC AGCGCCAGAA TGCCCGACAA
AGAAAAATGT GGATGGAAGG GGCTGCCAGC GAACAGGACA TGCAGATTAG CGAAGCCAAC
TTGCGGGTTG CACAAGCGCA GTTAGAAAGT CTTCAGGCAC AGATACGCCA AACGGAGTCA
ACGTTAAAAG GGGATAAGGT CAAGCTAGGG TATACCCAGA TTTATGCGCC AATCGCGGGT
ACGGTTGTGT CATTACAGGC TCGACCCGGT CAAACGCTCA ATGCAGTACA ACAAACCCCC
GTCATTATGC GGATTGCCGA TCTGACAAAG ATGACGGTAT CCGTTCGTGT TTCTGAAGCG
GATATTCCCC GTCTTCGTAT CGGAATGCCT GTCTATTTCA GTGTTCTCGG CTATCCGAAA
GCGCGTTGGA CAGCTAGGTT ACAGCAGATC ATGCCTGCTC CCCAAGGGAG TCAGGACAAC
ACGATGAATG GCGGAAACAT AGGGGGGAAC CCCATGATGG AAACGGTATT TTATACCGCC
CTTTTTGATA TTGATAACGC AGATGGCCGT TTGATGTCAC ACATGAGCGC TCAAGTTTAC
CTCGTTGTGA ATGCGGTAAA GCAGGCTATT AGCGTCCCGA TTTCCGCGTT GACGCTACGT
CCCGATGGGC AATTTCAGGT TGAGGTGATC CCTCCTGAAG GCGGTCGTGC CAACGCGATT
CCCCGTTTGG TTCAGGTGGG TATAAAAGGC CCCGTGCTGG CTCAAATCAC CTCTGGGCTG
AGTCTTGGTG AGCATGTTTT GTTGCCACCG CTGCCGCAAA TTGTGGAAAG TCATCCCTTA
TGGTAA
|
|---|
| Protein sequence | MESEIDKRQR KLWLGLLLML GALGIVIVVW GEGLFFSQTE FANRHSVEVT YADIDDVVTA
AGQVSPMQYV DVGVQVSGQI QHIAVAVGSI VKKGQLVAQI DPELQIATVE ANRALLDSQQ
AAIRQQAAQL TLAQRQNARQ RKMWMEGAAS EQDMQISEAN LRVAQAQLES LQAQIRQTES
TLKGDKVKLG YTQIYAPIAG TVVSLQARPG QTLNAVQQTP VIMRIADLTK MTVSVRVSEA
DIPRLRIGMP VYFSVLGYPK ARWTARLQQI MPAPQGSQDN TMNGGNIGGN PMMETVFYTA
LFDIDNADGR LMSHMSAQVY LVVNAVKQAI SVPISALTLR PDGQFQVEVI PPEGGRANAI
PRLVQVGIKG PVLAQITSGL SLGEHVLLPP LPQIVESHPL W
|
|---|
| |