Gene PC1_1312 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1312 
Symbol 
ID8132250 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp1529391 
End bp1530500 
Gene Length1110 bp 
Protein Length369 aa 
Translation table11 
GC content43% 
IMG OID644864602 
ProductGDP-mannose 4,6-dehydratase 
Protein accessionYP_003016895 
Protein GI253687705 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1089] GDP-D-mannose dehydratase 
TIGRFAM ID[TIGR01472] GDP-mannose 4,6-dehydratase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAAGG CAATTATTAG TGGTATTACT GGTCAAGATG GTTCTTATTT GGCAGAGTTT 
CTTCTAGAAA AAGGTTATGA AGTTCATGGT ATTGTGAGGA GAGCCTCTTC TTACAATACG 
GCACGTATTG ATCATATTAG TGAGGAATAT GGTCAGAATC TTCATTTGCA CTATGGAGAT 
TTGACGGATA CCTCGAACCT GGTTCGCCTT GTCAAAGAAA TTGAGCCCGA CGAATTCTAT 
AATCTCGGTG CCCAATCTCA TGTTGCAGTG TCTTTTGAAT CACCTGAATA TACCGCTGAT 
GTTGATGCTA TTGGCACATT GCGTATTCTT GAGGCGATTC GCATTAATGG ATTAGAGAAA 
AAGACGCGTT TTTACCAGGC ATCAACGTCT GAACTTTACG GCTTGGTACA AGAGATTCCA 
CAACGAGAAA CTACGCCATT TTACCCTCGT TCGCCTTATG CTGTAGCGAA GCTATATGCA 
TACTGGATTA CGGTAAACTA CCGTGAATCT TATGGAATGT ATGCCTGTAA CGGTATTCTC 
TTCAACCATG AATCTCCTCG TCGTGGTGAA ACATTTGTTA CTCGTAAAAT TACCCGAGCT 
ATTGCCAATA TCTCTCAGGG GCTAGAGTCT TGTTTGCATT TGGGAAATAT GGACTCGTTG 
CGTGACTGGG GACATGCTAA AGATTACGTT CGTATGCAGT GGTTAATGTT GCAGCAAAAT 
AATCCAGAGG ATTTTGTCAT CGCAACAGGC TACCAAATTA CAGTACGTGA GTTCGTTCGT 
ATGTCTGCAT TAGAAGCAGG GATTGAGCTT GAGTTTAGCG GCAGCGGCGT TGATGAAATT 
GCGACAGTAA AAGCCATCAC TGGGAATAAT GCGCCTGCGG TTAAAGTAGG CGATGTTATC 
GTCAAAGTGG ATCCACGTTA CTTTAGACCT GCGGAAGTTG AGACTCTCTT GGGTGATCCG 
GCAAAAGCAA AAGAAAAATT AGGCTGGGTA CCGGAAATCA CAGTAAATGA AATGTGTGCC 
GAAATGGTTG CTTCAGATCT GGATAACGCG AAACAGCATG TCTTACTTAA GCAACACGGA 
TTTGACGTAT CTATTTCTGT GGAGAGATAA
 
Protein sequence
MKKAIISGIT GQDGSYLAEF LLEKGYEVHG IVRRASSYNT ARIDHISEEY GQNLHLHYGD 
LTDTSNLVRL VKEIEPDEFY NLGAQSHVAV SFESPEYTAD VDAIGTLRIL EAIRINGLEK 
KTRFYQASTS ELYGLVQEIP QRETTPFYPR SPYAVAKLYA YWITVNYRES YGMYACNGIL 
FNHESPRRGE TFVTRKITRA IANISQGLES CLHLGNMDSL RDWGHAKDYV RMQWLMLQQN 
NPEDFVIATG YQITVREFVR MSALEAGIEL EFSGSGVDEI ATVKAITGNN APAVKVGDVI 
VKVDPRYFRP AEVETLLGDP AKAKEKLGWV PEITVNEMCA EMVASDLDNA KQHVLLKQHG 
FDVSISVER