Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1298 |
Symbol | |
ID | 8132236 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 1514743 |
End bp | 1516917 |
Gene Length | 2175 bp |
Protein Length | 724 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 644864588 |
Product | tyrosine kinase |
Protein accession | YP_003016881 |
Protein GI | 253687691 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
TIGRFAM ID | [TIGR01005] exopolysaccharide transport protein family [TIGR01007] capsular exopolysaccharide family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.661567 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAGAGA AAATTTCAGT AAAAGCATCC GAAACCAATA CGGATGAGAT TGATTTAGGA CGTTTGTTGG GAACATTGCT GGATAATCGC TGGTTAATTA TTGGTGTTAC TGCAGTTTTC ACAATTTTTG GTATTCTTTA TGCGACCTTT GCCACGCCGA TTTATAAAGC AGATGCACTC ATTCAGGTGG AACAAAGTTC AGGTAACTCT TTGCTGAAAG ATATTTCCAG CGTGTTACCC GATGCTAAAC CAGAATCGGC TGCTGAAATC GAGTTGATAA AGTCTCGTAT GGTTGTGGGT AAGACTGTGA AGGATTTGTC GTTGGATATT GTTGTCCAAC AAAAGTACTT TCCGATTTTT GGCAAAGGAT TCGCTCGTCT GATGGACGAT GAACCTGGAA AAATTGCTGT TTCACGGCTT GAAGTTCCTC AATCTTGGCA AGAAAAGTTA ATTAAGTTAA CTGTTTTGGA TTTACAGACG TATCAAGTCG AAGTCGGTGA TGTTGTAAAA TTTAAGGGCA AAGTTGGGCA AATAGAAAAA CATGATGGAC TCTCTATATT GCTGAGTGAG ATTCAGGCTG AACCAGGAAT GGTATTCCGT GTACAAAAGC TGAATACGCT TACGGCAATT AACAATGTCC TGGGTAATCT GTCTGTCGCC GATAAAGGTA AAGATACTGG TGTGCTATCG TTGAGCTTTG AAGGTGAAGA GGCTGAGCTT ACTAATAAAA TACTTAATAG TATTAGTCAA AATTACTTAC AGCAAAACGT TGAGCGTAAG TCAGAAGAAG CAGGGAAGAG TCTGGAATTT TTGAAAGAGC AGCTTCCTAG TGTACGTTTA AATTTGGATG ATGCAGATAA TAAGTTAAAT AGCTATCGTC AAAAAAATGA ATCTGTAGAT TTGTCGTTAG AGGCAAAAGC AGTTTTGGAT ACGATGGTTG CAGTTGAATC TCAATTAAAT GAATTAACTT TTAAAGAAGC TGAAATATCG AAACTTTATA CTAAGGAACA CCCAGCCTAC CGTGCTTTGA TGGAAAAGCG TAAAACGTTA GAAGAAGAAC GTGAGAAAAT TAATAAACGA GTAGGCGTTA TGCCTAAAAC CCAACAGGAA ATATTACGCT TAACGCGTGA TGTAAACGTT GGGCAAGAAG TCTACATGCA GTTACTTAAT AAGCAGCAAG AGCTTAGTAT TAACAAAGCG AGTACTGTAG GAAATGTTCG AATTATTGAC CCGTCTGCAA TTCAATTAAG CCCCGTAAAA CCTAAAAAAG CACTTATTGT GCTACTGGCT ATCTTACTCG GTGGAATGGT ATCAACGGCA TTTGTTGTAC TAAAAACTTT ATTACATAAA GGTATTGAAA GCCCTGAGCA GTTGGAGGAA TTAGGGATCA ATGTTTATGC GAGTGTGCCA CTTTCTGAAT GGCAACAGAA AAAAGACAGA GTGTTATTAG CAAGATCGAA TAAAAGTAAT ACACGGGCCA CTGAATTACT AGCGATTGGT AACCCTACAG ATCTTGCTAT TGAAGCAATT AGAAGCCTCC GTACCAGTCT GCATTTTGCC ATGATGGAAG CCAAAAATAA TGTACTGATG ATTTCTGGTG CTAGCCCGGC AATTGGTAAA ACATTTATCA GTGCAAACCT TGGGGCTGTT ATTTCTCAAT CTGGTCAACG CGTTCTAATT GTTGATTGTG ACATGCGTAA AGGCTACGCC CACGAGCTGA TGGGTACGCA GAGCGTTGAT GGCTTGTCGG ATATTTTGTC TGGGCAGATA GAAGTAGAGA AAAGTATTCG GAAAACGGCA CTGGAGAATA TGGATTTTAT TCCTCGCGGC CAAATTCCAC CTAATCCGTC CGAGCTTTTA ATGCATAGTC GGTTCCCGCA ATTTATTAAG TGGGCTGCGG AGCATTACGA TATTGTATTA TTAGATACAC CGCCGATACT CGCTGTAACG GATGCTGCTA TTATTAGCCG TCATGCAGGA ACTTCTCTCT TAGTTGCACG CTTTGAAGTG AATACACTCA AAGAAATTGA AGTCAGTATT CGTCGTTTTG AACAGAATGG TGCAGAAATA AAAGGCGTTA TTCTGAATGC TATTGTAAAA CGTGCGGCAA GTTACTACGG GTATGGAAAC TATCACTACT ATACCTATGA CTATAAGTCA GAAAAAAATA ATTAA
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Protein sequence | MAEKISVKAS ETNTDEIDLG RLLGTLLDNR WLIIGVTAVF TIFGILYATF ATPIYKADAL IQVEQSSGNS LLKDISSVLP DAKPESAAEI ELIKSRMVVG KTVKDLSLDI VVQQKYFPIF GKGFARLMDD EPGKIAVSRL EVPQSWQEKL IKLTVLDLQT YQVEVGDVVK FKGKVGQIEK HDGLSILLSE IQAEPGMVFR VQKLNTLTAI NNVLGNLSVA DKGKDTGVLS LSFEGEEAEL TNKILNSISQ NYLQQNVERK SEEAGKSLEF LKEQLPSVRL NLDDADNKLN SYRQKNESVD LSLEAKAVLD TMVAVESQLN ELTFKEAEIS KLYTKEHPAY RALMEKRKTL EEEREKINKR VGVMPKTQQE ILRLTRDVNV GQEVYMQLLN KQQELSINKA STVGNVRIID PSAIQLSPVK PKKALIVLLA ILLGGMVSTA FVVLKTLLHK GIESPEQLEE LGINVYASVP LSEWQQKKDR VLLARSNKSN TRATELLAIG NPTDLAIEAI RSLRTSLHFA MMEAKNNVLM ISGASPAIGK TFISANLGAV ISQSGQRVLI VDCDMRKGYA HELMGTQSVD GLSDILSGQI EVEKSIRKTA LENMDFIPRG QIPPNPSELL MHSRFPQFIK WAAEHYDIVL LDTPPILAVT DAAIISRHAG TSLLVARFEV NTLKEIEVSI RRFEQNGAEI KGVILNAIVK RAASYYGYGN YHYYTYDYKS EKNN
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