| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1286 |
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| Symbol | |
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| ID | 8132224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1497682 |
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| End bp | 1500729 |
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| Gene Length | 3048 bp |
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| Protein Length | 1015 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644864576 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_003016869 |
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| Protein GI | 253687679 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01553] formate dehydrogenase, alpha subunit, proteobacterial-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAACTGA ATAGACGAGG TTTCTTTAAA GTTTGCGCGG GGGGGATGGC TGGAACCACT
CTCGCGGTAT TGGGCTTTAC ACCCACGGAA GCAATGGCAT CAGTGCGTCA ATATAAACTG
TTACGCGCAA AAGAGACGCG TAACAACTGC ACATACTGTT CGGTCGGCTG CGGTGTGCTC
ATGTATAGCC TGGGCGATGG CGCCAAGAAC GCAAAACCTT CCGTTTTTCA TATCGAAGGT
GATGCGGACC ACCCAGTCAG CCGTGGCTCC CTTTGCCCGA AAGGTGCGGG TCTGGTCGAC
TACATTCACA GTGAAAACCG CCTGCTCTAT CCTGAATACC GTGCGCCAGG CTCAGACAAA
TGGCAACGAA TCAGCTGGGA AGACGCGATC GAACGCATCG CGCGCCTGAT GAAAGCTGAC
CGCGACGCCA ACTTCCAACG TACCAATGCC AAAGGCGAAA CGGTCAACCG CTGGCTGACC
ACTGGCATGT TGTGCTCTTC TGCCGCCAGC AACGAAACCG GCATTCTCGA CCAGAAATTT
GCCCGCTCTC TCGGCATGGT CGCCATCGAC TGTCAGGCTC GCCTGTGTCA CGGCCCAACC
GTCGCCGCGC TGGCACCGAC ATTCGGTCGT GGCGCCATGA CCAACAACTG GGTTGATATC
AAAAACGCCA ACGTCATCAT CGTCATGGGC GGCAACCCGG CAGAAGCACA TCCGGTCGGT
TTCAAATGGG CCGTTGAAGC GAAAACGCAC AATAATGCGA AACTGATCGT TGTCGATCCG
CGTTTTAACC GCTCCGCGGC CGTTGCCGAT CTCTACGCGC CGATTCGCGC TGGGTCAGAC
GCCGCCTTTC TGCTAGGTAT TGTTAACTAC CTTATTACAC ACGATAAAAT TCATCATGAA
TACGTGGTGT CTTACACCAG CGCCAGCCTG ATCGTACGAG AAGATTTCAG TTTTGACGAA
GGTTTGTTCA GCGGCTACGA CGAACAAAAA CGTCAATATG ATAAATCCAG CTGGCAGTAT
GAGCTCGATG AATCCGGCTT CGCCAAACGG GATACCACAC TGTCCCACCC GCGCTGCGTC
TGGAATCTGC TGAAAAAACA CGTTTCCCGC TATACGCCGG AAATGGTGAC ATCGCTATGC
GGTACTTCAG CCAAAGATTA TGAAACGATC TGCCGCACGC TCGCCGAAAC CTGTGTACCG
AATAAAACCG CAACCTTCAT GTACGCACTG GGCTGGACGC ACCACACCAA CGGTGCACAG
ATCATTCGCT CAGCGGCCAT GATCCAACTG TTACTTGGCA ACATCGGTAT GGCAGGTGGC
GGTATCAACG CCCTGCGCGG TCACTCTAAC ATTCAGGGCT ATACCGACCT TGGCCTGCTG
TCGTTAAATC TGCCGGGCTA TATGCCGTTG CCGTCAGAAA AACAGCCGGA TCTGAAAACT
TATCTGGGTC AAATCACGCC AACGGCGCTG CTGCCCGATC AAGTTAACTA TTGGAAAAAT
ACGCCAAAAT TCTTTATCAG CATGATGAAG AGCTTCTACG GTGACAACGC GCAGGCAGCG
AATAACTGGG GTTATGACTG GTTGCCGAAG TGGGATCGTA GCTACGACGT CATGGTGCAA
ACCGAGCTGA TGGTGGAAGG CAAAATGAAC GGCTACATCG TTCAGGGCTT TAACCCCGTT
GCCGCGTTCT CCAACAAGAA TAAAGCGACC GAAGCACTCT CCAAGCTCAA GTACATGGTC
ATCATCGATC CACTGGTCAC GGAAACGTCT ACATTCTGGC AGAATTATGG CGAATTCAAC
GACGTAGATA CGAAATCCAT TCAGACTGAG GTCTTCCGTC TGCCCTCTTC CTGCTTTGCT
GAAGAGAATG GGTCGATCGC CAACTCCGGC CGCTGGCTGC AATGGCACTG GGCGGCGGCT
GAGCCACCAG GTGAAGCCCA TCACGACGGT AAAATCCTCG GTAAACTGCT GATGCGCCTG
CGTGAGCTGT ATAAAGAAGA AGGCGGCGCC TACCCCGACC CGTTGATGAA CATCAACTGG
AACTATAAAG ACCCAGAAGA CCCAACGCCG GAAGAGATCG CCCGCGAAGC CAACGGCATG
GCGCTGGCGG ACATCTACGA CGACAGCGGC AAGCTGATCC TGAAAAAAGG CCAACAGGTT
GCTGACTTCT CGCAACTGCG CGATGACGGA TCCACATCCA GCTTCTGCTG GATCTATGCC
GGTAGCTGGA CAGAAGCGGG CAACCAGATG GATAAACGCG ACAACGCCGA TGCGGGTCTG
GGCTGTACGC CGAACTGGTC ATGGTGCTGG CCGCAAAACC GCCGCATTCT CTACAACCGC
GCGTCTGCCG ACCTGCAAGG GAAACCGTGG GATAGCAAGC GTAAATTGCT GGAATGGACC
GGTCAGAAAT GGCAAGGCAT TGATGTGCCT GACTTCGCCG CGACCGTCCC GCCGGGCAAA
GACACCGGGC CGTTCATCAT GCTGCCGGAA GGTTTGGCAC GTCTGTTCTC CGTAGACAAA
CTGGTAGATG GGCCGTTCCC TGAGCACTAC GAACCGATCG AATCGCCTAT TGGTACTAAC
CCACTGCATC CATCGGTGGT GTCCAGCCCG GCGGCGCGTT TGTTTGAACG CGATGCGAAA
ACCATGGGCA CCGCGAAGGA CTTCCCTTAC GTGGCGACGA CATACTCGAT TACCGAATTG
TTCCGTCACT GGACAAAACA CGCACGTCTG AACGCCATTG TGCAGCCGGA ACAGTTTGTC
GAAATCGGTG AAAATCTGGC GAAAAGCAAA GGCATTAAAG CAGGCGATGA AATCAAAGTT
TCCTGCCAGC GTGGCTACAT CAAAGCCAAA GCGGTGGTCA CCAAGCGAAT CAAAACGCTG
GAAATTGCCG GACACAGCGT GGAAACCGTT GGTATCCCTT GCCACTGGGG CTTTGAGGGA
ACCACCCGTA AAGGGTTCCT GGCTAACACA CTCACCCCGA GCGTCGGTGA CGCTAATTCA
CAAACGCCTG AGTACAAAGC GTTTTTGGTT AATGTAGAGA AGGTGTAA
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| Protein sequence | MQLNRRGFFK VCAGGMAGTT LAVLGFTPTE AMASVRQYKL LRAKETRNNC TYCSVGCGVL
MYSLGDGAKN AKPSVFHIEG DADHPVSRGS LCPKGAGLVD YIHSENRLLY PEYRAPGSDK
WQRISWEDAI ERIARLMKAD RDANFQRTNA KGETVNRWLT TGMLCSSAAS NETGILDQKF
ARSLGMVAID CQARLCHGPT VAALAPTFGR GAMTNNWVDI KNANVIIVMG GNPAEAHPVG
FKWAVEAKTH NNAKLIVVDP RFNRSAAVAD LYAPIRAGSD AAFLLGIVNY LITHDKIHHE
YVVSYTSASL IVREDFSFDE GLFSGYDEQK RQYDKSSWQY ELDESGFAKR DTTLSHPRCV
WNLLKKHVSR YTPEMVTSLC GTSAKDYETI CRTLAETCVP NKTATFMYAL GWTHHTNGAQ
IIRSAAMIQL LLGNIGMAGG GINALRGHSN IQGYTDLGLL SLNLPGYMPL PSEKQPDLKT
YLGQITPTAL LPDQVNYWKN TPKFFISMMK SFYGDNAQAA NNWGYDWLPK WDRSYDVMVQ
TELMVEGKMN GYIVQGFNPV AAFSNKNKAT EALSKLKYMV IIDPLVTETS TFWQNYGEFN
DVDTKSIQTE VFRLPSSCFA EENGSIANSG RWLQWHWAAA EPPGEAHHDG KILGKLLMRL
RELYKEEGGA YPDPLMNINW NYKDPEDPTP EEIAREANGM ALADIYDDSG KLILKKGQQV
ADFSQLRDDG STSSFCWIYA GSWTEAGNQM DKRDNADAGL GCTPNWSWCW PQNRRILYNR
ASADLQGKPW DSKRKLLEWT GQKWQGIDVP DFAATVPPGK DTGPFIMLPE GLARLFSVDK
LVDGPFPEHY EPIESPIGTN PLHPSVVSSP AARLFERDAK TMGTAKDFPY VATTYSITEL
FRHWTKHARL NAIVQPEQFV EIGENLAKSK GIKAGDEIKV SCQRGYIKAK AVVTKRIKTL
EIAGHSVETV GIPCHWGFEG TTRKGFLANT LTPSVGDANS QTPEYKAFLV NVEKV
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