Gene PC1_1285 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1285 
Symbol 
ID8132223 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp1496761 
End bp1497669 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content51% 
IMG OID644864575 
Productformate dehydrogenase, beta subunit 
Protein accessionYP_003016868 
Protein GI253687678 
COG category[C] Energy production and conversion 
COG ID[COG0437] Fe-S-cluster-containing hydrogenase components 1 
TIGRFAM ID[TIGR01582] formate dehydrogenase, beta subunit, Fe-S containing 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.519399 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAATGC AATCACAAGA TATTATTAAA CGTTCGGCCA CCAACGGCTT TACACCGCCT 
CCGCATGTGC GTAATGACAA AAGCGAAGTG GCAAAACTGA TCGATGTCAC CACCTGTATC 
GGCTGTAAAG CTTGTCAGGT GGCCTGTTCA GAGTGGAACG ACATTCGTGA TGAAGTCGGC 
CATAACCTCG GGGTTTATGA TAACCCGGCG GATCTGAGCG CCAAATCCTG GACGCTGATG 
CGATTTTCCG AAGTGGAAGA GAATGACCGT CTGGAATGGC TGATCCGTAA AGATGGCTGT 
ATGCACTGTA GCGATCCGGG CTGTCTGAAA GCCTGTCCTT CCGCTGGTGC CGTCATTCAG 
TATACCAATG GTATCGTTGA TTTTCAGTCC GAGAATTGTA TCGGCTGCGG CTATTGTATC 
GCCGGTTGCC CGTTCAATAT TCCACGTCTG AACAAAGAAG ATAATCGCGT CTATAAATGT 
ACGTTGTGCG TCGACAGAGT CAGCGTTGGG CAAGAACCGG CCTGTGTGAA AACCTGTCCG 
ACCGGCGCCA TTCGTTTCGG TACGAAAGAC GAAATGAAGC ATCTGGCGGA AGAACGCATC 
ACCGATCTGA AAAGCCGTGG TTATGAAAAC GCAGGCCTCT ACGATCCGCA GGGCGTGGGC 
GGTACACATG TGATGTATGT TCTGCACCAC GCGGACAGAC CATCGCTCTA TCACAATCTG 
CCAGATAACC CGCAGATTTC CACGCCGGTC AATCTGTGGA AAGGCATTCT GAAACCGCTG 
TCCGCGTTAG GGTTTGTCGC CACGTTCGCC GGGTTAATGT TCCACTATGT CGGTGTCGGT 
CCGAACACTG AGGAAATGGA TCATGAGCAC GAGGGAGAAG ACAAAGAAGG GGGAGACAAA 
CATGAGTAA
 
Protein sequence
MSMQSQDIIK RSATNGFTPP PHVRNDKSEV AKLIDVTTCI GCKACQVACS EWNDIRDEVG 
HNLGVYDNPA DLSAKSWTLM RFSEVEENDR LEWLIRKDGC MHCSDPGCLK ACPSAGAVIQ 
YTNGIVDFQS ENCIGCGYCI AGCPFNIPRL NKEDNRVYKC TLCVDRVSVG QEPACVKTCP 
TGAIRFGTKD EMKHLAEERI TDLKSRGYEN AGLYDPQGVG GTHVMYVLHH ADRPSLYHNL 
PDNPQISTPV NLWKGILKPL SALGFVATFA GLMFHYVGVG PNTEEMDHEH EGEDKEGGDK 
HE